CIR0205, CIR0205 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0205
AliasCIR205
Genbank IDAJ567151
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567151
Source Typegenomic
Repeat Motif(TG)8
PCR ConditionAnnealing temperature: 55
Primer 1CIR205_F: AAGAGGATTACAGGCAAC
Primer 2CIR205_R: ATTTAAGTCCCAGCTCAC
Product Length93
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567151
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D13chromosomeD13:4994105..4994198 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018227.1chromosomeCM018227.1:4573977..4574070 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:4221174..4221263 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_13chromosomeD10_13:4325387..4325490 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016626.1chromosomeCM016626.1:32692854..32692945 -Gossypium australe (G2) genome CRI_v1.1n/a
D13chromosomeD13:4769470..4769563 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:4584538..4584631 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:4580534..4580627 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:4794754..4794847 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:4479487..4479580 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt13chromosomeDt13:4728605..4728698 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold12415supercontigscaffold12415:311265..311356 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1981supercontigscaffold1981:184197..184290 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D13chromosomeGbar_D13:4323548..4323641 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:4337546..4337639 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:4528313..4528408 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:4834746..4834839 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:4469129..4469222 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:4900615..4900708 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:4238870..4238959 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_13chromosomeB_13:89694013..89694124 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr13chromosomeChr13:4573668..4573779 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr13chromosomechr13:4125687..4125790 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_13chromosomeChr_13:4498078..4498177 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:4847754..4847847 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:4638451..4638672 -Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:3152684..3152783 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr13chromosomeChr13:4650396..4650485 -Gossypium lobatum (D7) genome ISU_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567151AJ567151Gossypium hirsutumsequence_feature


Sequence
>CIR0205 ID=CIR0205; Name=CIR0205; organism=Gossypium hirsutum; type=genetic_marker; length=93bp
AAGAGGATTACAGGCAACACAGATAAAAATTCAGATATCTATATGTGTGT
GTGTGTGTGTTTCTCCTAACCCCTAGTGAGCTGGGACTTAAAT