CIR0195, CIR0195 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0195
AliasCIR195
Genbank IDAJ567142
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567142
Source Typegenomic
Repeat Motif(GT)7
PCR ConditionAnnealing temperature: 55
Primer 1CIR195_F: GCATACTCCTCTGGTAAA
Primer 2CIR195_R: AAATCTATGACACTCATGC
Product Length257
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567142
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D01chromosomeD01:37978020..37978277 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018215.1chromosomeCM018215.1:37660758..37661015 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:33539614..33539869 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_01chromosomeD10_01:24586295..24586558 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016614.1chromosomeCM016614.1:92002403..92002661 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr2chromosomeDt_chr2:1747295..1747552 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:35471465..35471722 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:37439192..37439449 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:39027000..39027257 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:38642869..38643126 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:36580765..36581022 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt01chromosomeDt01:36465652..36465909 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold15117supercontigscaffold15117:35959..36216 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D01chromosomeGbar_D01:38015194..38015451 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:38669711..38669968 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:38483086..38483343 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:39030248..39030503 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:38018529..38018786 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:39046000..39046257 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:28255421..28255676 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr02chromosomeChr02:37163850..37164111 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr02chromosomechr02:28769825..28770086 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_02chromosomeChr_02:25752267..25752530 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr02chromosomeChr02:37213196..37213453 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:28748251..28748508 -Gossypium aridum (D4) genome ISU_v1n/a
Chr02_3397473chromosomeChr02_3397473:2296..2553 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr02chromosomeChr02:27323445..27323704 -Gossypium lobatum (D7) genome ISU_v1n/a
F01chromosomeF01:60701872..60702130 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr02chromosomeCIR0195:1..263 .
Chr02:38833063..38833324 -		n/a
scaffold344supercontigCIR0195:1..263 .
scaffold344:92138..92399 +		n/a
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567142AJ567142Gossypium hirsutumsequence_feature


Sequence
>CIR0195 ID=CIR0195; Name=CIR0195; organism=Gossypium hirsutum; type=genetic_marker; length=257bp
GCATACTCCTCTGGTAAACATGCACTGTTACCAAAGGATTCCTTTGTTGT
TGAAACTTAAGGCATTTCTTGTGTCTCTTGTTGTTGTCTCAAATGTTTAA
TTAAGATGACATGTAAATATTTTCCTAGTGAACTAAGACATTACTAGTGA
GGTGCATGGGGTGAATGCTTGTTTTTCCTCACTAACTTTAAATGATGATA
TTTCCTGAATGCTTATATATGCGTGTGTGTGTGTGTATGCATGAGTGTCA
TAGATTT