CIR0192, CIR0192 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0192
AliasCIR192
Genbank IDAJ567139
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567139
Source Typegenomic
Repeat Motif(CA)7
PCR ConditionAnnealing temperature: 55
Primer 1CIR192_F: AATGTACGCACTAAGCAA
Primer 2CIR192_R: AACTTGTGGGTTTATGAAG
Product Length206
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567139
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A09chromosomeA09:81609747..81609952 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018210.1chromosomeCM018210.1:76820979..76821184 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:84740418..84740623 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
A09chromosomeA09:74788661..74788866 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A09chromosomeGhir_A09:81783637..81783842 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A09chromosomeA09:82922892..82923097 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:83282720..83282925 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:79606638..79606843 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At09chromosomeAt09:78975834..78976039 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4764supercontigscaffold4764:478885..479090 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A09chromosomeGbar_A09:77655114..77655319 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A09chromosomeA09:78988280..78988485 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017618.1chromosomeCM017618.1:78975378..78975583 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017696.1chromosomeCM017696.1:79120030..79120235 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A09chromosomeA09:85062177..85062382 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:84137451..84137656 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:86875654..86875859 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_09chromosomeB_09:70272224..70272426 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:131999811..132000007 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567139AJ567139Gossypium hirsutumsequence_feature


Sequence
>CIR0192 ID=CIR0192; Name=CIR0192; organism=Gossypium hirsutum; type=genetic_marker; length=206bp
AATGTACGCACTAAGCAACAAAATTACGAAATTCATGCCCCAAAACAAAG
CGTGAAATAAAAACAACCCCAAAACACAACTAAACGATATTTATTGTTAG
CACAAACATTTCAATAAATACAAACCTAACCTGAAAGCATGACAAGATAT
AAGGCCTACATATACGCACACACACACACAAGCAGAGCTTCATAAACCCA
CAAGTT