CIR0127, CIR0127 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0127
AliasCIR127
Genbank IDAJ567075
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567075
Source Typegenomic
Repeat Motif(AC)7(N)9(ATC)5
PCR ConditionAnnealing temperature: 55
Primer 1CIR127_F: AGGTAGAGGTGGTGAGAA
Primer 2CIR127_R: TATTTCGTTGGATTTGG
Product Length238
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567075
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A07chromosomeA07:43669319..43669557 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:44404131..44404369 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Dt_chr1chromosomeDt_chr1:15643755..15643993 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr6chromosomeAt_chr6:7500680..7500918 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A07chromosomeA07:42402974..42403212 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A07chromosomeA07:42400892..42401130 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A07chromosomeGhir_A07:44130306..44130544 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A07chromosomeA07:42967384..42967622 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:44156798..44157036 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:43141372..43141610 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
CM017616.1chromosomeCM017616.1:43388331..43388568 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017642.1chromosomeCM017642.1:43657150..43657390 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
A07chromosomeA07:44905830..44906068 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:45092794..45093032 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:46513877..46514115 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567075AJ567075Gossypium hirsutumsequence_feature


Sequence
>CIR0127 ID=CIR0127; Name=CIR0127; organism=Gossypium hirsutum; type=genetic_marker; length=238bp
AGGTAGAGGTGGTGAGAAACTTTCTAAAGACATGTTAACAACAACAACAA
CAAAAAATAAACAAAATAGATTTTTTCTTTCTCAACAAGAAACACACACA
CACACAAAAAAAGCCCTCAAAGACAATAAGCTCTAGATGCCAATGTTAGT
GTTTTGTAAAGAGAGAAAATAAAGAACAAAGGAACAAAAATAGCAGCAAT
TGATGCTAAACTGAAATACAACCAAATCCAACGAAATA