CIR0124, CIR0124 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0124
AliasCIR124
Genbank IDAJ567072
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567072
Source Typegenomic
Repeat Motif(AC)8
PCR ConditionAnnealing temperature: 55
Primer 1CIR124_F: TCCCGTCTATGTCTCTTT
Primer 2CIR124_R: AATTTGGATTTGAGGGT
Product Length216
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567072
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A07chromosomeA07:34511761..34511977 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018208.1chromosomeCM018208.1:33661336..33661552 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:23509170..23509384 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:34058537..34058753 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_07chromosomeD10_07:29727368..29727578 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016620.1chromosomeCM016620.1:71384767..71384977 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr1chromosomeDt_chr1:23504690..23504906 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A07chromosomeA07:33700065..33700281 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A07chromosomeGhir_A07:34696370..34696585 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A07chromosomeA07:33491558..33491774 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:34695794..34696010 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:34053886..34054102 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At07chromosomeAt07:38073786..38074002 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4644supercontigscaffold4644:285655..285871 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A07chromosomeGbar_A07:33706152..33706368 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A07chromosomeA07:33589461..33589677 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017616.1chromosomeCM017616.1:34024154..34024368 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017642.1chromosomeCM017642.1:34378493..34378711 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017694.1chromosomeCM017694.1:33944500..33944716 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A07chromosomeA07:35004217..35004433 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:35724508..35724724 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:36421253..36421469 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr07chromosomeChr07:28739970..28740184 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr01chromosomeChr01:24784741..24784949 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
F07chromosomeF07:31628055..31628271 +Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567072AJ567072Gossypium hirsutumsequence_feature


Sequence
>CIR0124 ID=CIR0124; Name=CIR0124; organism=Gossypium hirsutum; type=genetic_marker; length=216bp
TCCCGTCTATGTCTCTTTTCTTAAACTACTGCTACCACCAGACAGTACTA
AAAATTATGTCTCCAGCTCTCCAAAAAGTTGCGTACTTTCTGCGTACTTG
AAACAAGTCCCATGATAATGACACACACACACACACTAACACTAAGTTAG
CCTTTACAGGTAAGCCTCACAAATAGTTATGCCCATTAGTCACATCTGTA
CCCTCAAATCCAAATT