CIR0115, CIR0115 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0115
AliasCIR115
Genbank IDAJ567064
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567064
Source Typegenomic
Repeat Motif(CA)6
PCR ConditionAnnealing temperature: 55
Primer 1CIR115_F: GCTCTCCCTTTGTCTCT
Primer 2CIR115_R: TGGCAAGTCTATTTAAGGT
Product Length267
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567064
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D04chromosomeD04:1421668..1421936 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018218.1chromosomeCM018218.1:1326494..1326762 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D10_04chromosomeD10_04:1336983..1337251 -Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold586.1supercontigscaffold586.1:503376..503644 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D04chromosomeD04:1361981..1362249 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:1406414..1406682 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:1538060..1538328 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:1277220..1277488 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:1288457..1288725 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt04chromosomeDt04:1324688..1324956 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold11501supercontigscaffold11501:238516..238784 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D04chromosomeGbar_D04:1300344..1300612 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D04chromosomeD04:1390486..1390754 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:1488281..1488551 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:1503379..1503651 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
D04chromosomeD04:1700977..1701245 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:1457426..1457688 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr12chromosomechr12:1479484..1480139 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr12_1218568chromosomeChr12_1218568:1477..1745 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr12chromosomeChr12:1466752..1467022 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr12chromosomeChr12:1047382..1047652 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr12chromosomeChr12:1417371..1418085 -Gossypium lobatum (D7) genome ISU_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567064AJ567064Gossypium hirsutumsequence_feature


Sequence
>CIR0115 ID=CIR0115; Name=CIR0115; organism=Gossypium hirsutum; type=genetic_marker; length=267bp
GCTCTCCCTTTGTCTCTATTGAGATTCTCAATGAAAATGTGATAATGTGA
ATTCATCTAATCACAAGCAAATCTAAAGTATGCTCTCGCACACACACACA
CTCTCAGAGATACCAAGTGAGATTGTATTTGTAGCAAAAAATAAGGAAAA
TTTCACATAACGTTTAATTCAACAAGCATCAATAGCAAATATGCAGTTGA
ATATACATATATATCACGTTAAACCCAAGAAGTAACTCCACCGAATAAAC
CTTAAATAGACTTGCCA