CIR0111, CIR0111 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0111
AliasCIR111
Genbank IDAJ567060
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567060
Source Typegenomic
Repeat Motif(TA)6(CA)7
PCR ConditionAnnealing temperature: 55
Primer 1CIR111_F: TGTGAAGGACAAAGGG
Primer 2CIR111_R: ATGTAGAAGAAACGACGAG
Product Length286
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567060
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D01chromosomeD01:60039790..60040075 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018215.1chromosomeCM018215.1:58685409..58685694 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:52563133..52563418 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_01chromosomeD10_01:4033924..4034199 +Gossypium turneri (D10) genome NSF_v1_a2n/a
D01chromosomeD01:57288867..57289152 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:58970538..58970823 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:60543237..60543522 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:60383302..60383585 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:57620590..57620875 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt01chromosomeDt01:58240103..58240388 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold808supercontigscaffold808:4697..4982 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D01chromosomeGbar_D01:58908009..58908294 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:59560795..59561080 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:59785966..59786251 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:61268075..61268362 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:59268576..59268859 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:60870750..60871035 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:48372124..48372409 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr02chromosomeChr02:57113599..57113881 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr02chromosomechr02:43729242..43729512 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_02chromosomeChr_02:38855878..38856153 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr02chromosomeChr02:57922785..57923074 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:42073287..42073576 -Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:33304446..33304729 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr01chromosomeChr01:6602378..6602655 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr02chromosomeCIR0111:1..444 .
Chr02:58739851..58740294 -		n/a
Chr2chromosomeCIR0111:1..444 .
Chr2:6576999..6577442 +		n/a
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567060AJ567060Gossypium hirsutumsequence_feature


Sequence
>CIR0111 ID=CIR0111; Name=CIR0111; organism=Gossypium hirsutum; type=genetic_marker; length=286bp
TGTGAAGGACAAAGGGGCTTGGGTATTTCCACATACTGTAAATAAGGTCT
TACGATAATCAAACACTATATATATATACACACACACACACATATGTATA
CCATTCCTATGTTTTATAGTTTTCATAGAATGCCAATGGTGCTATCTATA
TATTTCAACTGCCAATTATGCGTTTCAGGATGATGGTTACTTACCAAAAC
ACTCAGTGCTGGAGCTTCAAAAGGCTTGGCATGGTTCAGAAGTGAGATGG
GTCACAGGTGGCCATGTCTCGTCGTTTCTTCTACAT