CIR0106, CIR0106 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	CIR0106
Alias	CIR106
Genbank ID	AJ567055
Type	SSR
Species	Gossypium hirsutum
Germplasm	Guazuncho-2
Source Sequence	AJ567055
Source Type	genomic
Repeat Motif	(TG)13
PCR Condition	Annealing temperature: 51
Primer 1	CIR106_F: CAGGCATAGTGTTTCA
Primer 2	CIR106_R: AAACAAGTCTCTTTCCA
Product Length	75
Publication	[view all]
Comment	Primer data obtained in 2005

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	AJ567055

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
A01	chromosome	A01:78577266..78577340 -	Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1	n/a
At_chr2	chromosome	At_chr2:48611986..48612060 -	Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1	n/a
A01	chromosome	A01:87737028..87737102 -	Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1	n/a
CM017688.1	chromosome	CM017688.1:86187019..86187093 -	Gossypium darwinii (AD5) genome HGS_v1.1	n/a

Publications


Year	Publication
2004	Nguyen TB, Giband M, Brottier P, Risterucci AM, Lacape JM. Wide coverage of the tetraploid cotton genome using newly developed microsatellite markers. Theoretical and applied genetics. 2004 Jun; 109(1):167-75

Germplasm


Stock Name	Type
Guazuncho-2	accession

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
AJ567055	AJ567055	Gossypium hirsutum	sequence_feature

Sequence

>CIR0106 ID=CIR0106; Name=CIR0106; organism=Gossypium hirsutum; type=genetic_marker; length=75bp
CAGGCATAGTGTTTCAATGAGACTAGCATTTGTGTGTGTGTGTGTGTGTG
TGTGTGATTGGAAAGAGACTTGTTT

Search form

CIR0106, CIR0106 (genetic_marker) Gossypium hirsutum