CIR0066, CIR0066 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0066
AliasCIR66
CIR066
Genbank IDAJ567015
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567015
Source Typegenomic
Repeat Motif(CA)7
PCR ConditionAnnealing temperature: 55
Primer 1CIR066_F: TAATCCCTTACCAGTTCC
Primer 2CIR066_R: TGCCTGAAACCACAA
Product Length131
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567015
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A08chromosomeA08:72620722..72620854 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018209.1chromosomeCM018209.1:66960371..66960503 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:74899013..74899145 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr4chromosomeAt_chr4:80043800..80043932 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A08chromosomeA08:56875926..56876058 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A08chromosomeGhir_A08:69230962..69231094 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A08chromosomeA08:72303304..72303436 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:71700508..71700640 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:63096079..63096211 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold18302supercontigscaffold18302:27127..27259 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold11605supercontigscaffold11605:190329..190461 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A08chromosomeGbar_A08:68206097..68206229 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A08chromosomeA08:68480105..68480237 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017617.1chromosomeCM017617.1:62520339..62520471 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017643.1chromosomeCM017643.1:76209749..76209881 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017695.1chromosomeCM017695.1:68406201..68406333 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A08chromosomeA08:72812486..72812618 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:70485771..70485903 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:75395180..75395312 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567015AJ567015Gossypium hirsutumsequence_feature


Sequence
>CIR0066 ID=CIR0066; Name=CIR0066; organism=Gossypium hirsutum; type=genetic_marker; length=131bp
TAATCCCTTACCAGTTCCTAACCTGGACGCATGCACACACACACACACCA
TACAGGGAAATTAGTAAAGTATCTGAAAGGAAAAGAGTTTTGAATCAACT
TTTTATCATGGTTTTGTTGTGGTTTCAGGCA