CIR0065, CIR0065 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0065
AliasCIR65
CIR065
Genbank IDAJ567014
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567014
Source Typegenomic
Repeat Motif(TG)8
PCR ConditionAnnealing temperature: 55
Primer 1CIR065_F: TCATTAGGTTCATCACCA
Primer 2CIR065_R: ATCAAGGCACTCATCAA
Product Length113
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567014
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D03chromosomeD03:49139879..49139991 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A03chromosomeA03:3168205..3168311 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018217.1chromosomeCM018217.1:49425106..49425218 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018204.1chromosomeCM018204.1:3419623..3419733 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_02chromosomeD5_02:42990539..42990649 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:110030032..110030142 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_02chromosomeD10_02:47353545..47353657 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016615.1chromosomeCM016615.1:108085676..108085786 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold154.1supercontigscaffold154.1:1696582..1696694 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D03chromosomeD03:42973123..42973235 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A03chromosomeA03:2502502..2502608 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D03chromosomeGhir_D03:48945862..48945974 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A03chromosomeGhir_A03:4252822..4252928 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D03chromosomeD03:50250848..50250960 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:3795531..3795637 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D03chromosomeD03:49925282..49925394 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:4062079..4062185 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D03chromosomeD03:49196164..49196276 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A03chromosomeA03:3483253..3483359 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt03chromosomeDt03:45621697..45621809 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At03chromosomeAt03:3014933..3015043 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold3010supercontigscaffold3010:197606..197718 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold7298supercontigscaffold7298:669766..669876 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D03chromosomeGbar_D03:47827917..47828029 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A03chromosomeGbar_A03:3433644..3433754 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D03chromosomeD03:50212217..50212329 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A03chromosomeA03:3525598..3525708 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017625.1chromosomeCM017625.1:48621302..48621416 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017612.1chromosomeCM017612.1:3738052..3738158 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017651.1chromosomeCM017651.1:52822490..52822604 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017638.1chromosomeCM017638.1:4113938..4114046 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017703.1chromosomeCM017703.1:50310273..50310385 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017690.1chromosomeCM017690.1:3708865..3708975 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D03chromosomeD03:51198733..51198845 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A03chromosomeA03:4133949..4134055 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:3226007..3226117 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:114969126..114969236 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr02chromosomeChr02:45081042..45081152 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_04chromosomeB_04:3900812..3900918 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr03chromosomeChr03:46740511..46740623 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr03chromosomechr03:31758014..31758257 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_03chromosomeChr_03:27315241..27315351 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr03chromosomeChr03:48636260..48636372 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr03chromosomeChr03:27515323..27515435 +Gossypium aridum (D4) genome ISU_v1n/a
Chr03chromosomeChr03:23474982..23475092 +Gossypium gossypioides (D6) genome ISU_v1n/a
F02chromosomeF02:72929319..72929429 +Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567014AJ567014Gossypium hirsutumsequence_feature


Sequence
>CIR0065 ID=CIR0065; Name=CIR0065; organism=Gossypium hirsutum; type=genetic_marker; length=113bp
TCATTAGGTTCATCACCACTCATGGATATGGATGTTGGAGTGAAGTCCCT
GAGAAAGCTGGTAAATACATGTGTGTGTGTGTGTGTATTGATTCATTTGA
TGAGTGCCTTGAT