CIR0064, CIR0064 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	CIR0064
Alias	CIR64 CIR064
Genbank ID	AJ567013
Type	SSR
Species	Gossypium hirsutum
Germplasm	Guazuncho-2
Source Sequence	AJ567013
Source Type	genomic
Repeat Motif	(GT)6
PCR Condition	Annealing temperature: 55
Primer 1	CIR064_F: GCAACGAAAGGCAAA
Primer 2	CIR064_R: ACCGATTGTATGAACGAG
Product Length	179
Publication	[view all]
Comment	Primer data obtained in 2005

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	AJ567013

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
D10_08	chromosome	D10_08:21910064..21910243 -	Gossypium turneri (D10) genome NSF_v1_a2	n/a
chr04	chromosome	chr04:30191936..30192202 +	Gossypium armourianum (D2-1) genome ISU_v1	n/a
Chr_04	chromosome	Chr_04:27510226..27510404 +	Gossypium harknessii (D2-2) genome ISU_v1	n/a

Publications


Year	Publication
2004	Nguyen TB, Giband M, Brottier P, Risterucci AM, Lacape JM. Wide coverage of the tetraploid cotton genome using newly developed microsatellite markers. Theoretical and applied genetics. 2004 Jun; 109(1):167-75

Germplasm


Stock Name	Type
Guazuncho-2	accession

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
AJ567013	AJ567013	Gossypium hirsutum	sequence_feature

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Yumian-1 x 7235, RIL (2015)	AD_ch24_Dt.08	N/A	13	CIR064	View

Sequence

>CIR0064 ID=CIR0064; Name=CIR0064; organism=Gossypium hirsutum; type=genetic_marker; length=179bp
GCAACGAAAGGCAAAAAAGAGAAATCTTTTTTGTATATTTTTAATCCAAA
AAGGCTTAATTTCTCTTGCGTGTGTGTGTGTTGTTGTTCTCTTTCTCGAT
TTTTCAAAATGCAGAAGAAAACGGCGTATTCGTTCCCCGACGAGATTTTG
GGGCACGTTTTCTCGTTCATACAATCGGT

Search form

CIR0064, CIR0064 (genetic_marker) Gossypium hirsutum