CIR0053, CIR0053 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0053
AliasCIR53
CIR053
Genbank IDAJ567002
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567002
Source Typegenomic
Repeat Motif(TG)6
PCR ConditionAnnealing temperature: 55
Primer 1CIR053_F: AGAGGACAGTTCATTCGT
Primer 2CIR053_R: ATCTTTAGCACCAACTCC
Product Length243
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567002
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D07chromosomeD07:23030487..23030729 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018221.1chromosomeCM018221.1:22225214..22225456 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:21103512..21103754 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
CM016620.1chromosomeCM016620.1:63934169..63934409 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr1chromosomeDt_chr1:56568638..56568880 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:22083110..22083352 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:22618925..22619167 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:21731126..21731368 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:22604790..22605032 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:22186345..22186587 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt07chromosomeDt07:25252319..25252561 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold14417supercontigscaffold14417:123512..123754 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D07chromosomeGbar_D07:22614062..22614304 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:22252127..22252369 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:22529672..22529914 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:22781163..22781405 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:22530486..22530728 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:22847296..22847538 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:31799678..31799920 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_07chromosomeB_07:29244685..29244927 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr01chromosomeChr01:22400950..22401192 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr01chromosomechr01:18633025..18633267 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_01chromosomeChr_01:16986551..16986793 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:17526982..17527224 -Gossypium aridum (D4) genome ISU_v1n/a
Chr01chromosomeChr01:14132464..14132706 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr01chromosomeChr01:17038298..17038540 -Gossypium lobatum (D7) genome ISU_v1n/a
E07chromosomeE07:58490900..58491140 +Gossypium stocksii (E1) genome NSF_v1n/a
F07chromosomeF07:26897796..26898036 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr07chromosomeChr07:62477160..62477400 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567002AJ567002Gossypium hirsutumsequence_feature


Sequence
>CIR0053 ID=CIR0053; Name=CIR0053; organism=Gossypium hirsutum; type=genetic_marker; length=243bp
AGAGGACAGTTCATTCGTTTTGTAAGATTTTAACAGCATCGGATACGAGC
ACTCATGGAGGGTTCTCCGTTCTTCGAAAGCATGCTACTGAGTGCCTGCC
TCCTTTGGTAATAAGTTTTGATTTATTCTGTTAATAACCCTTGTTAGACT
TTCAGATTATGGTGTTGAATTAAATTCTGTGTGTGTGTGTATTTGAACAG
GATATGAATCAGGCAACCCTACACAGGAGTTGGTGCTAAAGAT