CIR0049, CIR0049 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0049
AliasCIR49
CIR049
Genbank IDAJ566998
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ566998
Source Typegenomic
Repeat Motif(AC)6
PCR ConditionAnnealing temperature: 55
Primer 1CIR049_F: TGTAAACCCAGCAAGAG
Primer 2CIR049_R: ACACTCCTAGAGAACCCA
Product Length224
PolymorphismP_ CIR0049
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ566998
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A01chromosomeA01:20462570..20462798 +
Dt_chr8chromosomeDt_chr8:4428952..4429180 +
A01chromosomeA01:19123518..19123746 +
Ghir_A01chromosomeGhir_A01:19694593..19694821 +
A01chromosomeA01:19108140..19108368 +
A01chromosomeA01:19591903..19592129 +
A01chromosomeA01:20175767..20175994 +
CM017610.1chromosomeCM017610.1:20167756..20168012 +
A01chromosomeA01:19715584..19715812 +
E01chromosomeE01:22781374..22781597 +
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ566998AJ566998Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch01_At.01N/A81.6CIR049View
2Emian-22 x 3-79, BC1 (2011)AD_ch01_At.01N/A29.28CIR049View
3AD-genome wide Reference Map (2009)AD_ch01_At.01N/A95cir0049View
Sequence
>CIR0049 ID=CIR0049; Name=CIR0049; organism=Gossypium hirsutum; type=genetic_marker; length=224bp
TGTAAACCCAGCAAGAGGAGGAATCCTCATTCACCTACGAAGAATTGGGA
AAAAAAACATTAAATAAATAAAAAGTATGAATGATTTCATGTAAATGCGA
GGAAGATATATATATACATACACACACACACATATGCATATAAGGAAAAA
AAAAAAGACACACACACATGGAGGGCAAGGCGAGTTGACTGGAGGTTTCC
AGGAGATGGGTTCTCTAGGAGTGT