CIR0059, CIR0059 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0059
AliasCIR59
CIR059
Genbank IDAJ567008
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567008
Source Typegenomic
Repeat Motif(CT)9(N)7(CA)4(N)5(CA)5
PCR ConditionAnnealing temperature: 55
Primer 1CIR059_F: ATTGTCTTATGGTCCTCC
Primer 2CIR059_R: AACATCACCATTCCACTAC
Product Length93
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567008
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A13chromosomeA13:929529..929621 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018214.1chromosomeCM018214.1:832343..832431 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:920475..920569 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016618.1chromosomeCM016618.1:96385970..96386070 +Gossypium australe (G2) genome CRI_v1.1n/a
A13chromosomeA13:721440..721532 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A13chromosomeGhir_A13:687770..687862 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A13chromosomeA13:906401..906493 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:948579..948671 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:772333..772425 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold12836supercontigscaffold12836:379531..379619 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold12836supercontigscaffold12836:376063..376151 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A13chromosomeGbar_A13:863296..863384 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A13chromosomeA13:836498..836586 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017622.1chromosomeCM017622.1:917112..917206 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017648.1chromosomeCM017648.1:843600..843694 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017700.1chromosomeCM017700.1:671910..671996 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A13chromosomeA13:940281..940373 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:821044..821140 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:869262..869356 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_13chromosomeB_13:94202204..94202302 +Gossypium anomalum (B1) genome NSF_v1n/a
F13chromosomeF13:749399..749489 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr05chromosomeChr05:114525788..114525884 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr13chromosomeCIR0059:1..213 .
Chr13:42484751..42484978 +		n/a
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567008AJ567008Gossypium hirsutumsequence_feature


Sequence
>CIR0059 ID=CIR0059; Name=CIR0059; organism=Gossypium hirsutum; type=genetic_marker; length=93bp
ATTGTCTTATGGTCCTCCGGTACTCTCTCTCTCTCTCTCTCATTCACTCA
CACACATACACACACACATTTCTCGTAGTGGAATGGTGATGTT