CIR0250, CIR0250 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	CIR0250
Alias	CIR250
Genbank ID	AJ567195
Type	SSR
Species	Gossypium hirsutum
Germplasm	Guazuncho-2
Source Sequence	AJ567195
Source Type	genomic
Repeat Motif	(AT)6(N)7(GT)7
PCR Condition	Annealing temperature: 55
Primer 1	CIR250_F: GTGCGTCACTAAAGACAA
Primer 2	CIR250_R: ACCATTCGTGAACACATA
Product Length	159
Publication	[view all]
Comment	Primer data obtained in 2005

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	AJ567195

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
A07	chromosome	A07:45658028..45658184 -	Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1	n/a
Chr07_CRI-A2_v1.0.a1	chromosome	Chr07_CRI-A2_v1.0.a1:49831666..49831848 +	Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1	n/a
At_chr7	chromosome	At_chr7:15590122..15590278 -	Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1	n/a
scaffold1855_A07	supercontig	scaffold1855_A07:7776..7932 -	Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1	n/a
Ghir_A07	chromosome	Ghir_A07:48176125..48176281 -	Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1	n/a
A07	chromosome	A07:47139751..47139907 -	Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1	n/a
A07	chromosome	A07:48306178..48306334 -	Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1	n/a
A07	chromosome	A07:46663698..46663854 -	Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1	n/a
CM017616.1	chromosome	CM017616.1:47687438..47687594 -	Gossypium tomentosum (AD3) genome HGS_v1.1	n/a
CM017642.1	chromosome	CM017642.1:48198047..48198201 -	Gossypium mustelinum (AD4) genome JGI_v1.1	n/a
CM017694.1	chromosome	CM017694.1:46365330..46365488 -	Gossypium darwinii (AD5) genome HGS_v1.1	n/a
A07	chromosome	A07:49248932..49249088 -	Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1	n/a
Chr07	chromosome	Chr07:49877824..49877988 -	Gossypium herbaceum (A1) 'Mutema' genome WHU_v1	n/a
Chr07	chromosome	Chr07:51347097..51347281 -	Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1	n/a

Publications


Year	Publication
2004	Nguyen TB, Giband M, Brottier P, Risterucci AM, Lacape JM. Wide coverage of the tetraploid cotton genome using newly developed microsatellite markers. Theoretical and applied genetics. 2004 Jun; 109(1):167-75

Germplasm


Stock Name	Type
Guazuncho-2	accession

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
AJ567195	AJ567195	Gossypium hirsutum	sequence_feature

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	CCRI-36 x Hai-7124, F2 (2007)	AD_ch07_At.07	N/A	88.9	CIR250	View
2	AD-genome wide Reference Map (2009)	AD_ch07_At.07	N/A	99	cir0250	View

Sequence

>CIR0250 ID=CIR0250; Name=CIR0250; organism=Gossypium hirsutum; type=genetic_marker; length=159bp
GTGCGTCACTAAAGACAATGTTGGGATGTCGAAAAGCAAAGCCATTGGAC
AAGTAGCTAATCTGGTTTTGNTCTTATAACTCGAGTTTATTTAATAATTA
AATATATATATGTTTGTAGTGTGTGTGTGTGTTTGAATCAATATGTGTTC
ACGAATGGT

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CIR0250, CIR0250 (genetic_marker) Gossypium hirsutum