BNL4100, BNL4100 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL4100
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL4100_orig
Source Typegenomic
Repeat Motif(AG)14
PCR ConditionAnnealing temperature: 55
Primer 1BNL4100_F: CATGTAGAGAGAGAGAGAGAGAGAGAGA
Primer 2BNL4100_R: TCGCATTTCTTTTCCAACCTT
PolymorphismP_ BNL4100
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D06chromosomeD06:18828354..18828438 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A06chromosomeA06:29729604..29729684 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018207.1chromosomeCM018207.1:28097325..28097411 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM016619.1chromosomeCM016619.1:106478955..106479035 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr10chromosomeAt_chr10:79912434..79912514 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr10chromosomeDt_chr10:26419237..26419319 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:17916817..17916901 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A06chromosomeA06:27836640..27836720 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:18555781..18555863 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A06chromosomeGhir_A06:29683455..29683533 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:18061674..18061758 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:28800420..28800500 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:18526791..18526873 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:29323106..29323186 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:18053170..18053254 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A06chromosomeA06:28760576..28760656 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A06chromosomeGbar_A06:27921647..27921737 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A06chromosomeA06:28012296..28012382 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017615.1chromosomeCM017615.1:29056067..29056145 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:17974955..17975041 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017641.1chromosomeCM017641.1:30129722..30129826 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:17828150..17828228 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017693.1chromosomeCM017693.1:28567520..28567604 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:18724401..18724485 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A06chromosomeA06:29732431..29732511 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:30634195..30634279 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:12783371..12783514 -Gossypium aridum (D4) genome ISU_v1n/a
F06chromosomeF06:30673982..30674091 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr06chromosomeChr06:146337931..146338005 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL4100_origBNL4100_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1AD-genome wide Reference Map (2009)AD_ch25_Dt.06N/A76BNL4100View
2Emian-22 x 3-79, BC1 (2011)AD_ch25_Dt.06N/A76.93BNL4100View
Sequence
>BNL4100 ID=BNL4100; Name=BNL4100; organism=Gossypium hirsutum; type=genetic_marker; length=81bp
CATGTAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTATATAGAAAAAGGAA
ATAATGCATTAAGGTTGGAAAAGAAATGCGA