BNL4023, BNL4023 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL4023
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL4023_orig
Source Typegenomic
Repeat Motif(GT)16
PCR ConditionAnnealing temperature: 55
Primer 1BNL4023_F: TGGACAGCTCCCTTTTGAAC
Primer 2BNL4023_R: ATGGTACAATTAAAAGGTTAGTATACACG
PolymorphismP_ BNL4023
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D01chromosomeD01:63568550..63568824 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D5_01chromosomeD5_01:55790596..55790832 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
scaffold3227.1supercontigscaffold3227.1:27808..28082 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:60634509..60634783 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:62388216..62388490 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:63803909..63804183 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:63795388..63795662 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:60260615..60260889 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold17339supercontigscaffold17339:83740..84017 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D01chromosomeGbar_D01:62083971..62084248 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:62764284..62764561 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:63107163..63107437 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:64635020..64635292 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:62581893..62582167 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:64273531..64273805 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:51573897..51574133 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr02chromosomeChr02:60536290..60536563 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr02chromosomeChr02:61432639..61432910 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:35529298..35529587 +Gossypium gossypioides (D6) genome ISU_v1n/a
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL4023_origBNL4023_origGossypium hirsutumsequence_feature


Sequence
>BNL4023 ID=BNL4023; Name=BNL4023; organism=Gossypium hirsutum; type=genetic_marker; length=198bp
TGGACAGCTCCCTTTTGAACCTAATCAGAGGCAAAGTTAGAAATTGTATT
GGTATAAGGAGGATTAAATAAAAAAAACTATCATTTTTTGGGTCAAATTA
TAATTTTGCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCTGTGGA
TATGTCGCTACCATATGTACGTGTATACTAACCTTTTAATTGTACCAT