BNL3904, BNL3904 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL3904
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL3904_orig
Source Typegenomic
Repeat Motif(GT)11
PCR ConditionAnnealing temperature: 55
Primer 1BNL3904_F: ATGCATTAATGAGTCGATAGGC
Primer 2BNL3904_R: GCACAAAGAAAACAAACTGTACG
PolymorphismP_ BNL3904
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D12chromosomeD12:11879694..11879915 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018226.1chromosomeCM018226.1:11562607..11562828 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D10_12chromosomeD10_12:8522191..8522418 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr8chromosomeDt_chr8:24812846..24813067 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr8chromosomeAt_chr8:34247706..34247929 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:11865758..11865979 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:11812474..11812695 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:11566575..11566796 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:11851711..11851932 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:11766739..11766960 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt12chromosomeDt12:12844355..12844576 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Dt12chromosomeDt12:12843019..12843240 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1623supercontigscaffold1623:47037..47258 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1623supercontigscaffold1623:45701..45922 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D12chromosomeGbar_D12:11589171..11589392 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:11444194..11444415 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:11608407..11608628 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:11736495..11736716 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:11537011..11537230 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:12051094..12051315 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:11706779..11707032 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr08chromosomechr08:10655943..10656158 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_08chromosomeChr_08:10569385..10569714 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:11835436..11835637 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:9880959..9881192 +Gossypium aridum (D4) genome ISU_v1n/a
Chr08chromosomeChr08:9162416..9162733 +Gossypium lobatum (D7) genome ISU_v1n/a
Chr08chromosomeBNL3904:1..328 .
Chr08:11337079..11337300 +		n/a
Chr8chromosomeBNL3904:1..328 .
Chr8:43708174..43708395 +		n/a
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL3904_origBNL3904_origGossypium hirsutumsequence_feature


Sequence
>BNL3904 ID=BNL3904; Name=BNL3904; organism=Gossypium hirsutum; type=genetic_marker; length=222bp
ATGCATTAATGAGTCGATAGGCTTGAAAGCAATATAAAATATGGTATGAG
ATGAGAAGTGTGTGTGTGTGTGTGTGTGTATGAGATGAGAAGTGTTTTAC
ATAGAATTGTAAGGAATTAGATTAGAAATTGAATGTATACTTGTTGCATA
AGTTAATTACTTTGTTTGAATCATAGATATACCATTGAGTATTGCTCAAC
GTACAGTTTGTTTTCTTTGTGC