BNL3567, BNL3567 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL3567
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL3567_orig
Source Typegenomic
Repeat Motif(CA)13
PCR ConditionAnnealing temperature: 55
Primer 1BNL3567_F: CAATAAAGCCCACCCAGAGA
Primer 2BNL3567_R: TTGCTATGCAATGTTGAGGG
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
A06chromosomeA06:100632437..100632684 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:108367176..108367425 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
CM016619.1chromosomeCM016619.1:21427246..21427482 +Gossypium australe (G2) genome CRI_v1.1
At_chr10chromosomeAt_chr10:20823668..20823915 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
A06chromosomeA06:84902728..84902975 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_D06chromosomeGhir_D06:51779881..51780112 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
Ghir_A06chromosomeGhir_A06:103855969..103856216 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
A06chromosomeA06:106739311..106739558 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A06chromosomeA06:105540557..105540804 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A06chromosomeA06:101413594..101413841 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
scaffold5227supercontigscaffold5227:54125..54355 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold5227supercontigscaffold5227:44796..45026 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold5227supercontigscaffold5227:41489..41719 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gbar_D06chromosomeGbar_D06:48356485..48356715 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
CM017615.1chromosomeCM017615.1:101551584..101551835 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017641.1chromosomeCM017641.1:106175492..106175747 +Gossypium mustelinum (AD4) genome JGI_v1.1
A06chromosomeA06:107643648..107643895 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr06chromosomeChr06:106516792..106517059 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr06chromosomeChr06:108448337..108448586 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
Chr10chromosomeChr10:27144041..27144274 +Gossypium gossypioides (D6) genome ISU_v1
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL3567_origBNL3567_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
10-153 x sGK9708, RIL (2016)AD_ch06_At.06N/A43.9BNL3567View
2CCRI-36 x G2005, RIL (2016)AD_ch06_At.06N/A31.08BNL3567View
Sequence
>BNL3567 ID=BNL3567; Name=BNL3567; organism=Gossypium hirsutum; type=genetic_marker; length=248bp
CAATAAAGCCCACCCAGAGACGTAACAATTAATGCTCTCAGCATTATCAC
GTAAACTTCAGAAAACAATCACAAGACCATTTACGCATATATATTGTATA
TATGCGTACTTATTTACACATATATTATATATACACTCATTAGCACGACA
GCTCACAATTTTCACACACACACACACACACACACACACTCAACCTTTAA
TGCACAATTCATTCACACACATTTGATACCCTCAACATTGCATAGCAA