BNL3232, BNL3232 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL3232
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL3232_orig
Source Typegenomic
Repeat Motif(AG)15
PCR ConditionAnnealing temperature: 55
Primer 1BNL3232_F: AGCTCACCAACCCCATATTG
Primer 2BNL3232_R: TCTATTGTATGTTATTGCTGCCC
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D07chromosomeD07:17981551..17981762 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018221.1chromosomeCM018221.1:17310490..17310703 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D10_07chromosomeD10_07:37381346..37381549 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr1chromosomeDt_chr1:53513516..53513729 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:17405102..17405315 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:17806282..17806493 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:17076502..17076715 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:17777725..17777937 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:17330524..17330737 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D07chromosomeGbar_D07:17752128..17752341 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:17365224..17365437 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:17753062..17753271 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:17995869..17996076 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:17702231..17702462 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:17987392..17987605 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:17438789..17438986 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr01chromosomechr01:14747231..14747432 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_01chromosomeChr_01:13765500..13765699 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:17278766..17278963 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeBNL3232:1..469 .
Chr01:16856879..16857293 -		n/a
Chr1chromosomeBNL3232:1..469 .
Chr1:20059409..20059823 +		n/a
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL3232_origBNL3232_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Xinluzao-1 x Hai-7124, F2 (2008)AD_ch16_Dt.07N/A94.2bnl3232View
2AD-genome wide Reference Map (2009)AD_ch16_Dt.07N/A81bnl3232View
Sequence
>BNL3232 ID=BNL3232; Name=BNL3232; organism=Gossypium hirsutum; type=genetic_marker; length=214bp
AGCTCACCAACCCCATATTGGGATACATCTAAGTCATACCCTTGGGTCTA
TATTGAACTCTACTAAAAAGATAATCAAGATACAAAGGATTCACTCTAAA
TCATCTTTATCCTGTAGACACTCATTTTTTTCAAGATTAAAGGGACATGA
CACATNNAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTGAGGGCAGCAA
TAACATACAATAGA