BNL1154, BNL1154 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL1154
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL1154_orig
Source Typegenomic
Repeat Motif(AG)17
PCR ConditionAnnealing temperature: 55
Primer 1BNL1154_F: CATCTATTTTCGTGGGGTGC
Primer 2BNL1154_R: AACCCTTTGTTCAATTTCTCG
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:64707734..64707897 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018225.1chromosomeCM018225.1:61351934..61352101 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018225.1chromosomeCM018225.1:61342898..61343065 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018225.1chromosomeCM018225.1:61360967..61361120 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
scaffold326.1supercontigscaffold326.1:585318..585563 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:59498997..59499182 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:64155225..64155390 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:63248372..63248537 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:63988527..63988691 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:63997558..63997707 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:61369398..61369563 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold26803supercontigscaffold26803:32105..32266 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D11chromosomeGbar_D11:60842242..60842405 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D11chromosomeGbar_D11:60851273..60851424 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
CM017633.1chromosomeCM017633.1:63545053..63545204 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017711.1chromosomeCM017711.1:60763026..60763254 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:63931956..63932121 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeBNL1154:1..382 .
Chr07:53309055..53309533 -		n/a
scaffold474supercontigBNL1154:1..382 .
scaffold474:99880..100338 -		n/a
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL1154_origBNL1154_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch21_Dt.11N/A201.36BNL1154View
2Xinluzao-1 x Hai-7124, F2 (2008)AD_chUN/A183.6BNL1154View
3Emian-22 x 3-79, BC1 (2015)AD_ch21_Dt.11N/A192.2BNL1154View
4LMY28 x XLZ24, RIL (2018)AD_ch21_Dt.11N/A19.91BNL1154View
5TM-1 x Hai-7124, BC1 (2008)AD_ch21_Dt.11N/A45.42BNL1154-230View
6TM-1 x Hai-7124, BC1 (2012)AD_ch21_Dt.11N/A133.4BNL1154-230View
7MGG-293-793, MAGIC (2018)AD_ch21_Dt.11N/A192.2BNL1154View
Sequence
>BNL1154 ID=BNL1154; Name=BNL1154; organism=Gossypium hirsutum; type=genetic_marker; length=166bp
CATCTATTTTCGTGGGGTGCTTAGGTTGTCATCCTTATTCGTGTAAAAAA
ATTTAGCAACACTCTAGACAAATATTTCATTTCCTTCGTTTAGAGAGAGA
AAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACACGAGA
AATTGAACAAAGGGTT