BNL0300, BNL0300 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL0300
AliasBNL300
BNL0300=TMB0978
TMB0978
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL0300_orig
Source Typegenomic
Repeat Motif(AG)12
PCR ConditionAnnealing temperature: 55
Primer 1BNL0300_F: TGGGTGTGATGATTGGTTTT
Primer 2BNL0300_R: CTCGTTGCGTTTCTTTCTCC
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D01chromosomeD01:11353600..11353760 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018215.1chromosomeCM018215.1:11432044..11432204 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:10977623..10977804 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_01chromosomeD10_01:49464078..49464260 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016614.1chromosomeCM016614.1:18839090..18839262 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr2chromosomeDt_chr2:44066099..44066259 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:10605712..10605872 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:11915153..11915310 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:11666734..11666894 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:11445271..11445429 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:11805189..11805349 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt01chromosomeDt01:10678882..10679042 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10212supercontigscaffold10212:9878..10038 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D01chromosomeGbar_D01:12039402..12039560 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:11855930..11856094 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:11640977..11641137 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:12562848..12563016 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:11821031..11821191 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:12123942..12124102 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:10858610..10858788 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr02chromosomeChr02:11799563..11799736 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr02chromosomeChr02:11647168..11647332 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:11659556..11659794 +Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:8027578..8027803 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr02chromosomeChr02:10530109..10530409 +Gossypium lobatum (D7) genome ISU_v1n/a
E01chromosomeE01:16906735..16906915 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr01chromosomeChr01:175082154..175082323 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr02chromosomeBNL0300:1..310 .
Chr02:12840839..12841177 +		n/a
Chr2chromosomeBNL0300:1..310 .
Chr2:40387694..40388060 +		n/a
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL0300_origBNL0300_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1AD-genome wide Reference Map (2009)AD_ch15_Dt.01N/A146bnl0300View
2Xinluzao-1 x Hai-7124, F2 (2008)AD_ch15_Dt.01N/A12BNL300View
Sequence
>BNL0300 ID=BNL0300; Name=BNL0300; organism=Gossypium hirsutum; type=genetic_marker; length=161bp
TGGGTGTGATGATTGGTTTTAAAACAGAATATAATATATATATATATATA
TAGAGAGAGAGAGAGAGAGAGAGAGTCTTATTCATGTAAGGTAGACATGG
AGGCTTTAAAATGAGAGTCTGGGGACATGGGTGAAGGGAAGGGAGAAAGA
AACGCAACGAG