BNL0218, BNL0218 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL0218
AliasBNL218
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL0218_orig
Source Typegenomic
Repeat Motif(TC)18
PCR ConditionAnnealing temperature: 55
Primer 1BNL0218_F: AGGAAGGCATGTCATGGGTA
Primer 2BNL0218_R: TTCGCTTTGCAGGAAGACT
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A05chromosomeA05:20152856..20152991 +
A05chromosomeA05:20069837..20069980 +
CM018206.1chromosomeCM018206.1:19518896..19519035 +
CM018206.1chromosomeCM018206.1:19465198..19465325 +
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:19777468..19777605 +
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:19719969..19720102 +
CM016626.1chromosomeCM016626.1:29389553..29389686 +
At_chr9chromosomeAt_chr9:42516453..42516588 +
At_chr9chromosomeAt_chr9:42465603..42465756 +
A05chromosomeA05:18271443..18271578 +
A05chromosomeA05:18220275..18220410 +
Ghir_A05chromosomeGhir_A05:19881874..19882015 +
Ghir_A05chromosomeGhir_A05:19935215..19935348 +
A05chromosomeA05:19349792..19349927 +
A05chromosomeA05:19292388..19292531 +
A05chromosomeA05:19893316..19893455 +
A05chromosomeA05:19946685..19946818 +
A05chromosomeA05:20110048..20110183 +
A05chromosomeA05:20056654..20056797 +
scaffold4750supercontigscaffold4750:56756..56883 +
scaffold19770supercontigscaffold19770:17631..17764 +
Gbar_A05chromosomeGbar_A05:19099328..19099467 +
Gbar_A05chromosomeGbar_A05:19045641..19045768 +
A05chromosomeA05:19814790..19814927 +
A05chromosomeA05:19761578..19761723 +
CM017614.1chromosomeCM017614.1:19527924..19528055 +
CM017614.1chromosomeCM017614.1:19581593..19581718 +
CM017640.1chromosomeCM017640.1:19890087..19890226 +
CM017640.1chromosomeCM017640.1:19947025..19947152 +
CM017692.1chromosomeCM017692.1:19329394..19329533 +
CM017692.1chromosomeCM017692.1:19274508..19274635 +
A05chromosomeA05:20240649..20240784 +
A05chromosomeA05:20187264..20187405 +
Chr05chromosomeChr05:21083890..21084037 +
Chr05chromosomeChr05:21016036..21016163 +
Chr05chromosomeChr05:19642390..19642525 +
Chr05chromosomeChr05:19699925..19700062 +
chr09chromosomechr09:15179827..15180845 +
Chr09chromosomeChr09:14555442..14556180 +
E05chromosomeE05:21095052..21095165 +
F05chromosomeF05:16848919..16849054 +
F05chromosomeF05:16862630..16862793 +
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL0218_origBNL0218_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch05_At.05N/A122.02BNL218View
2JLZM x ZJXSLS, F2 (2008)A_JZ_A12N/A158.4BNL218View
3AD-genome wide Reference Map (2009)AD_ch05_At.05N/A85bnl0218View
Sequence
>BNL0218 ID=BNL0218; Name=BNL0218; organism=Gossypium hirsutum; type=genetic_marker; length=136bp
AGGAAGGCATGTCATGGGTATTTATACAGATGAAGGCAGCACTACTTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATGCATGCTAAATTGAAT
CATTCAACGATGCCATTAGTCTTCCTGCAAAGCGAA