Gh624, Gh624 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh624
Genbank IDDQ908558
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908558
Source Typegenomic
Repeat MotifGT(11)
Primer 1Gh624_F: AGTCGTTTCCCTGTCTTTTAATTGATG
Primer 2Gh624_R: CAAAAAAGTGCAACAGTAACAGCAG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908558
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A11chromosomeA11:17424728..17424811 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018212.1chromosomeCM018212.1:16864211..16864294 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:106482362..106482445 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr7chromosomeAt_chr7:2587862..2587945 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A11chromosomeA11:17193304..17193387 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:15012936..15013005 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:17511442..17511525 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A11chromosomeA11:16945337..16945420 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:17243016..17243099 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:17652471..17652554 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold17432supercontigscaffold17432:114721..114804 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold15460supercontigscaffold15460:120699..120768 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D11chromosomeGbar_D11:14718166..14718249 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:16602720..16602789 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A11chromosomeA11:16854650..16854733 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017620.1chromosomeCM017620.1:17268663..17268746 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017646.1chromosomeCM017646.1:17388957..17389038 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017698.1chromosomeCM017698.1:17103584..17103667 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A11chromosomeA11:17772974..17773057 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:18323205..18323294 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:17812558..17812643 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908558DQ908558Gossypium hirsutumsequence_feature


Sequence
>Gh624 ID=Gh624; Name=Gh624; organism=Gossypium hirsutum; type=genetic_marker; length=84bp
AGTCGTTTCCCTGTCTTTTAATTGATGAAATATGTGTGTGTGTTTGTGTG
TGTGTGTCACTGCTGTTACTGTTGCACTTTTTTG