Gh623, Gh623 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh623
Genbank IDDQ908557
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908557
Source Typegenomic
Repeat MotifAC(14)
Primer 1Gh623_F: CATCTCATCGCATCATATTCATTCC
Primer 2Gh623_R: CTGCTTCCAGGTTTTCTCATTCTC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908557
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A05chromosomeA05:59456444..59456573 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018206.1chromosomeCM018206.1:70669172..70669301 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:82315679..82315805 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr8chromosomeAt_chr8:62102801..62102932 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A05chromosomeA05:53609307..53609438 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A06chromosomeGhir_A06:73643142..73643258 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A04chromosomeGhir_A04:9439028..9439136 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:76295071..76295202 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:41199739..41199847 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A05chromosomeA05:78718958..78719089 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:77297335..77297466 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:76301329..76301460 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At06chromosomeAt06:41631969..41632085 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At02chromosomeAt02:71735768..71735877 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold13935supercontigscaffold13935:212826..212929 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold6748supercontigscaffold6748:132279..132388 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1106supercontigscaffold1106:69949..70080 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1047supercontigscaffold1047:452097..452213 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A06chromosomeGbar_A06:43670271..43670387 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:71538437..71538568 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A05chromosomeA05:74484137..74484268 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:74168953..74169080 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017640.1chromosomeCM017640.1:77966962..77967101 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
A05chromosomeA05:78539641..78539772 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:16973363..16973518 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:17009723..17009850 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908557DQ908557Gossypium hirsutumsequence_feature


Sequence
>Gh623 ID=Gh623; Name=Gh623; organism=Gossypium hirsutum; type=genetic_marker; length=132bp
CATCTCATCGCATCATATTCATTCCAATTTTTAGAAGGTCCCTAATTTAG
TTAAAATTAACACACACACACACACACACACACACACAGAGAGAGAGAAA
GAGAGTAAGAGAATGAGAAAACCTGGAAGCAG