Gh533, Gh533 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh533
Genbank IDDQ908472
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908472
Source Typegenomic
Repeat MotifTCT(14)
Primer 1Gh533_F: TCCCTCCAATTTTTCTGTCGTTCC
Primer 2Gh533_R: CAATATTGGGGGGAGAAGAAACTTG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908472
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A07chromosomeA07:81259483..81259599 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018208.1chromosomeCM018208.1:80047290..80047406 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:83722087..83722194 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr12chromosomeAt_chr12:36306736..36306858 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A07chromosomeA07:66157260..66157376 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A07chromosomeGhir_A07:84365208..84365324 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A07chromosomeA07:83078923..83079039 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:83790930..83791052 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:79774979..79775101 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At07chromosomeAt07:73509088..73509204 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1733supercontigscaffold1733:418476..418592 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A07chromosomeGbar_A07:79614785..79614901 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A07chromosomeA07:81268665..81268781 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017616.1chromosomeCM017616.1:83158714..83158854 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017642.1chromosomeCM017642.1:85906334..85906498 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017694.1chromosomeCM017694.1:81275126..81275254 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A07chromosomeA07:85312297..85312413 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:86711157..86711282 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:88039611..88039718 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908472DQ908472Gossypium hirsutumsequence_feature


Sequence
>Gh533 ID=Gh533; Name=Gh533; organism=Gossypium hirsutum; type=genetic_marker; length=117bp
TCCCTCCAATTTTTCTGTCGTTCCTTTTTTCCCCCTTCTTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTCAACCCAAGTTTC
TTCTCCCCCCAATATTG