Gh264, Gh264 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh264
Genbank IDDQ908204
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908204
Source Typegenomic
Repeat MotifGAA(11)
Primer 1Gh264_F: CTCGCCATATCTCACTTAAAGATTGG
Primer 2Gh264_R: ACCGTATATCCAATCTTTGATCTTTGC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908204
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D08chromosomeD08:68324273..68324379 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018222.1chromosomeCM018222.1:64265715..64265830 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018209.1chromosomeCM018209.1:117462411..117462518 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D10_08chromosomeD10_08:1179593..1179693 +Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold246.1supercontigscaffold246.1:255832..255938 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold4247_D08supercontigscaffold4247_D08:66451..66557 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:67233093..67233199 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A08chromosomeGhir_A08:121012357..121012451 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:67479497..67479603 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:67080301..67080407 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:64380267..64380373 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At08chromosomeAt08:106765406..106765513 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold12408supercontigscaffold12408:291170..291285 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10104supercontigscaffold10104:117912..118019 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D08chromosomeGbar_D08:64398926..64399038 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A08chromosomeGbar_A08:118208635..118208742 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:66135769..66135881 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A08chromosomeA08:119123261..119123367 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017708.1chromosomeCM017708.1:64653258..64653379 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:67797553..67797659 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:130394068..130394174 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:62808225..62808322 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr04chromosomeChr04:41895465..41895565 -Gossypium aridum (D4) genome ISU_v1n/a
Chr7chromosomeGh264:1..592 .
Chr7:47077182..47077772 +		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908204DQ908204Gossypium hirsutumsequence_feature


Sequence
>Gh264 ID=Gh264; Name=Gh264; organism=Gossypium hirsutum; type=genetic_marker; length=107bp
CTCGCCATATCTCACTTAAAGATTGGAACTTTAGCCTTTTTCTTAAAGAA
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCAAAGATCAAAGATTGGAT
ATACGGT