Gh263, Gh263 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh263
Genbank IDDQ908203
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908203
Source Typegenomic
Repeat MotifTCT(7)
Primer 1Gh263_F: GTTCTTAGAGTGAGGGATTGGACG
Primer 2Gh263_R: CCTCATTTAAGAACCCTAGCTAGG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908203
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A03chromosomeA03:44959801..44959898 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018204.1chromosomeCM018204.1:44956760..44956854 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:73600296..73600393 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr12chromosomeAt_chr12:82453156..82453253 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A03chromosomeA03:40999815..40999912 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:40633126..40633220 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A03chromosomeGhir_A03:48339530..48339627 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:48152248..48152345 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:46380396..46380493 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:42846304..42846401 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold1432supercontigscaffold1432:53492..53586 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A03chromosomeGbar_A03:44498456..44498550 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:45889020..45889114 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:45750050..45750144 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017638.1chromosomeCM017638.1:48334771..48334865 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:45695575..45695669 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:48613606..48613703 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:60091661..60091758 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908203DQ908203Gossypium hirsutumsequence_feature


Sequence
>Gh263 ID=Gh263; Name=Gh263; organism=Gossypium hirsutum; type=genetic_marker; length=98bp
GTTCTTAGAGTGAGGGATTGGACGATATAACCATTTCTTCTCTTCTTCTT
CTTCTTCTTCTTTTTCTTCTATTGCCTAGCTAGGGTTCTTAAATGAGG