SWU07-223, SWU07-223 (genetic_marker) Gossypium hirsutum

Marker Overview
NameSWU07-223
Genbank IDCA993596
TypeSSR
SpeciesGossypium hirsutum
Repeat Motif(CAA)3
Primer 1SWU07-223_F: AAATCGAAAGTGAGACAAGC
Primer 2SWU07-223_R: CTTTATTGCTGCGACCAT
Product Length146
Publication[view all]
Commentmarker sequence confirmed
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA993596
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A13chromosomeA13:83731146..83731291 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018214.1chromosomeCM018214.1:88156577..88156722 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:101677664..101677811 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_13chromosomeD10_13:43578604..43578752 +Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr13chromosomeAt_chr13:27456857..27457002 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A13chromosomeA13:60371093..60371238 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A13chromosomeGhir_A13:87472369..87472514 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A13chromosomeA13:90485618..90485763 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:88521918..88522063 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:87202655..87202800 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A13chromosomeGbar_A13:89398659..89398804 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A13chromosomeA13:92408057..92408202 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017622.1chromosomeCM017622.1:89863375..89863520 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017648.1chromosomeCM017648.1:94692522..94692669 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017700.1chromosomeCM017700.1:90402939..90403084 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A13chromosomeA13:90796184..90796329 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:95677446..95677593 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:99818034..99818181 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_13chromosomeB_13:24326544..24326692 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr13chromosomeChr13:42589230..42589378 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr13chromosomechr13:31238497..31238645 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_13chromosomeChr_13:29457677..29457825 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:44853129..44853277 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:28864208..28864356 +Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:22378677..22378825 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr13chromosomeChr13:28139647..28139795 +Gossypium lobatum (D7) genome ISU_v1n/a
F13chromosomeF13:75731716..75731861 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr13chromosomeChr13:36696601..36696749 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>SWU07-223 ID=SWU07-223; Name=SWU07-223; organism=Gossypium hirsutum; type=genetic_marker; length=146bp
AAATCGAAAGTGAGACAAGCAGTACAATCTCATCAACAACAATTCTCTGA
CCAAATCATAGACTTTATTTGTTTCTGAAGCTTGCAGATAAAAGATTAGT
ATTCGCAGACAAATGGAGCTCTGACATGATGGTCGCAGCAATAAAG