SWU07-204, SWU07-204 (genetic_marker) Gossypium hirsutum

Marker Overview
NameSWU07-204
Genbank IDCA993237
TypeSSR
SpeciesGossypium hirsutum
Repeat Motif(TA)3
Primer 1SWU07-204_F: ACAGATACAGTAGATTCGTA
Primer 2SWU07-204_R: GAGGGAGTAAGTTCACAA
Product Length217
Publication[view all]
Commentmarker sequence confirmed
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA993237
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A07chromosomeA07:4537786..4538002 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018208.1chromosomeCM018208.1:4886351..4886567 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:4247417..4247625 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:4931846..4932062 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold787.1supercontigscaffold787.1:347699..347915 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A07chromosomeA07:4032774..4032990 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A07chromosomeGhir_A07:4899884..4900100 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A07chromosomeA07:4858001..4858217 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:4885026..4885242 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A07chromosomeGbar_A07:4849562..4849778 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A07chromosomeA07:4748350..4748566 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017616.1chromosomeCM017616.1:4666502..4666718 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:4623470..4623688 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017642.1chromosomeCM017642.1:4861454..4861670 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017694.1chromosomeCM017694.1:4837660..4837876 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A07chromosomeA07:4890037..4890253 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:4943593..4943809 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:4934970..4935186 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr07chromosomeChr07:49284963..49285171 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_07chromosomeB_07:5123266..5123483 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr01chromosomeChr01:4430813..4431032 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr01chromosomechr01:4132685..4132903 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr01chromosomeChr01:4440782..4441000 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:3420831..3421049 +Gossypium aridum (D4) genome ISU_v1n/a
Chr01chromosomeChr01:3178246..3178445 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr01chromosomeChr01:3865645..3865863 +Gossypium lobatum (D7) genome ISU_v1n/a
E07chromosomeE07:88530432..88530650 -Gossypium stocksii (E1) genome NSF_v1n/a
F07chromosomeF07:4323883..4324101 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr07chromosomeChr07:6826741..6826960 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>SWU07-204 ID=SWU07-204; Name=SWU07-204; organism=Gossypium hirsutum; type=genetic_marker; length=217bp
ACAGATACAGTAGATTCGTATATACAGACACAAGTACTAAAATCTAGACA
AATACAAACACTTGTTCAACCAACTGTGAAATGATAATTAAAGGATTATA
ATGTTGGTGACAACATCCAACCTACTCGTGTCAAAACAGTTCAAACAAAG
AAACAATTTTGAAGGTTAACTACCAATTATCTTCACGTACATGGTCTAAT
TGTGAACTTACTCCCTC