SWU07-189, SWU07-189 (genetic_marker) Gossypium hirsutum

Marker Overview
NameSWU07-189
Genbank IDCA993982
TypeSSR
SpeciesGossypium hirsutum
Repeat Motif(TC)3,(TTG)3
Primer 1SWU07-189_F: TTTGTAATTCTTACCGTCTC
Primer 2SWU07-189_R: ACTTCATCAATGGCTCGT
Product Length249
Publication[view all]
Commentmarker sequence confirmed
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA993982
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D04chromosomeD04:47248258..47248506 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A04chromosomeA04:71976758..71977006 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018218.1chromosomeCM018218.1:45358376..45358624 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018205.1chromosomeCM018205.1:70602298..70602546 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_04chromosomeD5_04:8693556..8693804 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_2_4chromosomeKI_2_4:5433896..5434144 -Gossypioides kirkii genome ISU_v3n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:11035711..11035959 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_04chromosomeD10_04:44224116..44224359 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016617.1chromosomeCM016617.1:113052809..113053052 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold542.1supercontigscaffold542.1:753956..754204 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr12chromosomeDt_chr12:29029202..29029450 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D04chromosomeD04:42261197..42261445 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A04chromosomeA04:53153505..53153753 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:47118352..47118600 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A04chromosomeGhir_A04:74140286..74140534 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:48086420..48086668 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A04chromosomeA04:77109285..77109533 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:47011527..47011775 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:74276181..74276429 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:45000247..45000495 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A04chromosomeA04:69910791..69911039 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D04chromosomeGbar_D04:43449777..43450025 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A04chromosomeGbar_A04:70936901..70937149 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D04chromosomeD04:48559013..48559261 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A04chromosomeA04:71544651..71544899 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:45675268..45675516 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017613.1chromosomeCM017613.1:73035619..73035867 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:48514887..48515135 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017639.1chromosomeCM017639.1:81138323..81138571 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017704.1chromosomeCM017704.1:45626392..45626640 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017691.1chromosomeCM017691.1:71313144..71313392 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:48806316..48806564 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A04chromosomeA04:77909463..77909711 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:97525555..97525803 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:99417659..99417907 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr04chromosomeChr04:8644899..8645147 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_02chromosomeB_02:11040516..11040764 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr12chromosomeChr12:45264522..45264770 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_12chromosomeChr_12:17968752..17968995 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr12chromosomeChr12:44918685..44918913 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr12chromosomeChr12:21041796..21042045 +Gossypium aridum (D4) genome ISU_v1n/a
Chr12chromosomeChr12:16203463..16203711 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr12chromosomeChr12:19862610..19862859 +Gossypium lobatum (D7) genome ISU_v1n/a
E04chromosomeE04:92298715..92298958 +Gossypium stocksii (E1) genome NSF_v1n/a
F04chromosomeF04:81520948..81521193 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr04chromosomeChr04:153921518..153921761 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>SWU07-189 ID=SWU07-189; Name=SWU07-189; organism=Gossypium hirsutum; type=genetic_marker; length=249bp
TTTGTAATTCTTACCGTCTCTCACACACACTAATCTTTATGTCTCAATAC
TTCTACCATCTCATAGTGTCAGTATCAAGAATACGTTACCTTAAATGAGT
TAACATGATAAAGGAGTTGCAATTTAATTATCTCATCTCTTGTTTCATAT
TGACCATCTAAGTTTGTTGTTGTGTTTCAGGCAAGTGCACAACCATTTCT
GGTTCTTGGTTTACTGGTGACTGCTTTAGCAACGAGCCATTGATGAAGT