SWU07-187, SWU07-187 (genetic_marker) Gossypium herbaceum

Marker Overview
NameSWU07-187
Genbank IDCA994062
TypeSSR
SpeciesGossypium herbaceum
Repeat Motif(AG)3
Primer 1SWU07-187_F: AATGAAATGCCAAAGAGG
Primer 2SWU07-187_R: AAAGAAGATAAATCAGCCAC
Product Length132
Publication[view all]
Commentmarker sequence confirmed
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA994062
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A02chromosomeA02:87658389..87658520 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D03chromosomeD03:2537401..2537532 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018203.1chromosomeCM018203.1:97328338..97328469 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018217.1chromosomeCM018217.1:2371211..2371342 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_02chromosomeD5_02:2414859..2414990 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:2199696..2199827 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_02chromosomeD10_02:2318615..2318746 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016615.1chromosomeCM016615.1:3418890..3419022 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold587.1supercontigscaffold587.1:188415..188546 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold712.1supercontigscaffold712.1:104165..104296 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A02chromosomeA02:81011317..81011448 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D03chromosomeD03:2391794..2391925 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A02chromosomeGhir_A02:105452942..105453073 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D03chromosomeGhir_D03:2469568..2469699 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A02chromosomeA02:105692044..105692175 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D03chromosomeD03:2408002..2408133 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A02chromosomeA02:103116679..103116810 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D03chromosomeD03:2481267..2481398 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A02chromosomeA02:101707783..101707914 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D03chromosomeD03:2474492..2474623 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A02chromosomeGbar_A02:97491315..97491446 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D03chromosomeGbar_D03:2379443..2379574 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A02chromosomeA02:99511229..99511360 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D03chromosomeD03:2418541..2418672 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017611.1chromosomeCM017611.1:102334425..102334556 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017625.1chromosomeCM017625.1:2417190..2417321 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017637.1chromosomeCM017637.1:107222819..107222950 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017651.1chromosomeCM017651.1:2477745..2477876 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017689.1chromosomeCM017689.1:99657086..99657217 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017703.1chromosomeCM017703.1:2406417..2406548 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A02chromosomeA02:105566842..105566973 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D03chromosomeD03:2569239..2569370 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:89908058..89908189 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr02chromosomeChr02:99514022..99514153 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr02chromosomeChr02:2294540..2294671 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_04chromosomeB_04:71051764..71051893 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr03chromosomeChr03:2400543..2400674 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr03chromosomechr03:2268758..2268889 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_03chromosomeChr_03:1802131..1802262 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr03chromosomeChr03:2446857..2446988 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr03chromosomeChr03:1861200..1861331 -Gossypium aridum (D4) genome ISU_v1n/a
Chr03chromosomeChr03:1693481..1693612 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr03chromosomeChr03:2112603..2112734 -Gossypium lobatum (D7) genome ISU_v1n/a
E02chromosomeE02:3096799..3096930 -Gossypium stocksii (E1) genome NSF_v1n/a
F02chromosomeF02:2282661..2282792 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr02chromosomeChr02:136589767..136589898 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>SWU07-187 ID=SWU07-187; Name=SWU07-187; organism=Gossypium herbaceum; type=genetic_marker; length=132bp
AATGAAATGCCAAAGAGGGGCATACAGCCAGATGAAATTACCTAGTCAGA
TTTGAAGCATGGTATCGTGAAAGCTAAGAGAGTTGTGAGACATAAGGACC
TCTGAGATTCAAGTGGCTGATTTATCTTCTTT