SWU07-185, SWU07-185 (genetic_marker) Gossypium hirsutum

Marker Overview
NameSWU07-185
Genbank IDCA992742
TypeSSR
SpeciesGossypium hirsutum
Repeat Motif(CA)3,(CTC)4
Primer 1SWU07-185_F: CACTGACAGGGCAGAAAT
Primer 2SWU07-185_R: GAGGAGGAGGAGATGTTGA
Product Length249
Publication[view all]
Commentmarker sequence confirmed
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA992742
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D07chromosomeD07:5889309..5889557 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A07chromosomeA07:5967939..5968176 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018221.1chromosomeCM018221.1:5518769..5519017 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018208.1chromosomeCM018208.1:6211214..6211451 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D10_07chromosomeD10_07:48363552..48363803 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016620.1chromosomeCM016620.1:108008542..108008793 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold72.1supercontigscaffold72.1:2401632..2401869 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr1chromosomeDt_chr1:40598658..40598906 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:5415799..5416047 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A07chromosomeA07:5443703..5443940 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:5759910..5760158 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A07chromosomeGhir_A07:6298183..6298420 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:5527526..5527774 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:5917781..5918018 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:5713892..5714140 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:6257473..6257710 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:5555166..5555414 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A07chromosomeA07:6323946..6324183 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D07chromosomeGbar_D07:5776112..5776360 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A07chromosomeGbar_A07:6178521..6178758 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:5685544..5685792 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A07chromosomeA07:6039119..6039356 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:5971535..5971783 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017616.1chromosomeCM017616.1:5966892..5967129 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:5862884..5863132 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017642.1chromosomeCM017642.1:6218166..6218403 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:5777521..5777769 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017694.1chromosomeCM017694.1:6108742..6108979 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:5832059..5832307 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A07chromosomeA07:6306626..6306863 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:6298530..6298767 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
B_07chromosomeB_07:6592083..6592323 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr01chromosomeChr01:5614728..5614979 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr01chromosomechr01:5260595..5260846 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr01chromosomeChr01:5632002..5632253 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:4050765..4051016 -Gossypium gossypioides (D6) genome ISU_v1n/a
E07chromosomeE07:86837046..86837299 +Gossypium stocksii (E1) genome NSF_v1n/a
F07chromosomeF07:5675389..5675626 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr07chromosomeChr07:8952977..8953228 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>SWU07-185 ID=SWU07-185; Name=SWU07-185; organism=Gossypium hirsutum; type=genetic_marker; length=249bp
CACTGACAGGGCAGAAATTACACCACACACTCATTATTTTGCATGGTTTT
TCACCACATTTTCCATAAAAACAAAAACTATATGTAATTTAATCATACAT
TGACAAACGAGAAGTCCTTTATGGCATCTCTTGTCAATCATTGTCCATTT
GTATAACTCTTTTTTCCCTTTCATCCAATTATTAAACTTTCTGTGAAGCA
TCTAAAGTGTTTTTCTTTATATTTTGAGCTTCAACATCTCCTCCTCCTC