SWU07-168, SWU07-168 (genetic_marker) Gossypium hirsutum

Marker Overview
NameSWU07-168
Genbank IDCA993141
TypeSSR
SpeciesGossypium hirsutum
Repeat Motif(TA)3,(CAG)3
Primer 1SWU07-168_F: ATGCTTTGCTTTATTTAACTCG
Primer 2SWU07-168_R: GCTTGGCTCTAATGTGGG
Product Length239
Publication[view all]
Commentmarker sequence confirmed
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA993141
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D07chromosomeD07:7995084..7995567 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A07chromosomeA07:8724488..8724993 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018221.1chromosomeCM018221.1:7583707..7584190 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018208.1chromosomeCM018208.1:8901229..8901734 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:7473562..7474048 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_07chromosomeKI_07:31914292..31914672 +Gossypioides kirkii genome ISU_v3n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:8971277..8971782 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_07chromosomeD10_07:46322129..46322598 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016620.1chromosomeCM016620.1:104331876..104332382 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold120.1supercontigscaffold120.1:220656..221161 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr1chromosomeDt_chr1:39809099..39809582 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:7528391..7528874 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A07chromosomeA07:8066911..8067416 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:7842214..7842697 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A07chromosomeGhir_A07:9031127..9031632 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:7516752..7517235 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:8548006..8548511 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:7793300..7793783 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:8996883..8997387 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:7647823..7648306 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A07chromosomeA07:9052125..9052630 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D07chromosomeGbar_D07:7875441..7875924 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A07chromosomeGbar_A07:8859161..8859666 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:7722566..7723049 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A07chromosomeA07:8678160..8678665 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:7986362..7986845 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017616.1chromosomeCM017616.1:8674379..8674884 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:8002296..8002779 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017642.1chromosomeCM017642.1:8907758..8908262 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:7841457..7841940 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017694.1chromosomeCM017694.1:8802847..8803352 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:7925998..7926481 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A07chromosomeA07:9067251..9067756 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:9220619..9221125 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:9058216..9058722 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr07chromosomeChr07:46103637..46104123 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_07chromosomeB_07:9111150..9111656 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr01chromosomeChr01:7692270..7692756 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_01chromosomeChr_01:7348587..7349056 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:7622131..7622618 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:6367447..6368001 -Gossypium aridum (D4) genome ISU_v1n/a
Chr01chromosomeChr01:5369438..5369946 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr01chromosomeChr01:6656612..6657099 -Gossypium lobatum (D7) genome ISU_v1n/a
E07chromosomeE07:83579100..83579592 +Gossypium stocksii (E1) genome NSF_v1n/a
F07chromosomeF07:8103225..8103729 -Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>SWU07-168 ID=SWU07-168; Name=SWU07-168; organism=Gossypium hirsutum; type=genetic_marker; length=239bp
ATGCTTTGCTTTATTTAACTCGAACATGTAATTCAATACAAAGTGCTTGA
GATGTATATATGAATTATCAAATACAACAAAAAAGACAAGTTACACCAAA
TATTTCCAAACTAACAATCTTGTCACACCCTGCATCCACGATTCAGCAGC
AGATAGTATCCATGATTTGCTTCTTATACGACCATGACATGCGTATTATA
TGGAAATGTAAATACAGATATCCCACATTAGAGCCAAGC