SWU07-166, SWU07-166 (genetic_marker) Gossypium hirsutum

Marker Overview
NameSWU07-166
Genbank IDCA993004
TypeSSR
SpeciesGossypium hirsutum
Repeat Motif(CT)3
Primer 1SWU07-166_F: GGACGCACCCAGTTCTAC
Primer 2SWU07-166_R: TTGGGCAAATGGAGGTAG
Product Length247
Publication[view all]
Commentmarker sequence confirmed
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA993004
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D07chromosomeD07:7504525..7504771 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A07chromosomeA07:8030268..8030514 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018221.1chromosomeCM018221.1:7107444..7107690 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018208.1chromosomeCM018208.1:8237426..8237672 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:7031078..7031324 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_07chromosomeKI_07:32194046..32194301 -Gossypioides kirkii genome ISU_v3n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:8355638..8355884 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_07chromosomeD10_07:46811500..46811743 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016620.1chromosomeCM016620.1:105391015..105391261 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold120.1supercontigscaffold120.1:900832..901078 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr1chromosomeDt_chr1:37005814..37006060 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:7047169..7047415 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A07chromosomeA07:7360504..7360750 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:7352188..7352434 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A07chromosomeGhir_A07:8346684..8346930 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:7041869..7042115 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:7906394..7906640 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:7303188..7303434 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:8311996..8312242 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:7157273..7157519 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A07chromosomeA07:8381928..8382174 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D07chromosomeGbar_D07:7391821..7392067 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A07chromosomeGbar_A07:8195341..8195587 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:7253764..7254010 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A07chromosomeA07:8012313..8012559 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:7519380..7519626 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017616.1chromosomeCM017616.1:8004482..8004728 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:7511011..7511257 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017642.1chromosomeCM017642.1:8225546..8225792 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:7369979..7370225 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017694.1chromosomeCM017694.1:8128674..8128920 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:7435621..7435867 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A07chromosomeA07:8382630..8382876 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:8510637..8510883 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:8356119..8356365 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr07chromosomeChr07:46548501..46548747 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_07chromosomeB_07:8399752..8399998 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr01chromosomeChr01:7172616..7172855 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_01chromosomeChr_01:6981707..6981950 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:7148949..7149195 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:5901778..5902123 +Gossypium aridum (D4) genome ISU_v1n/a
Chr01chromosomeChr01:5027795..5028041 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr01chromosomeChr01:6283846..6284092 +Gossypium lobatum (D7) genome ISU_v1n/a
E07chromosomeE07:84619469..84619715 -Gossypium stocksii (E1) genome NSF_v1n/a
F07chromosomeF07:7449806..7450052 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>SWU07-166 ID=SWU07-166; Name=SWU07-166; organism=Gossypium hirsutum; type=genetic_marker; length=247bp
GGACGCACCCAGTTCTACACTCAAGAATTTGCAACCAGCACATCGCCATC
GGAACTATCTTCCCTGGCATTACCAGTTCCATCATGACTTCTTCTGTTCT
CAATTTCTTCCAGTTTCCCTGACCATCCATACATCTGTCTTCTAGCATCC
CTTCGAGCTGCTCTCTCCGCTAGCTTCAGTTCTTTGAATCCTTGCTCAAA
CTTTGCTTCATCCTCCGGCGAAAAGAAGACTACCTCCATTTGCCCAA