SWU07-144, SWU07-144 (genetic_marker) Gossypium hirsutum

Marker Overview
NameSWU07-144
Genbank IDCA992928
TypeSSR
SpeciesGossypium hirsutum
Repeat Motif(TG)3
Primer 1SWU07-144_F: ACGAAACCCTGCCATCCG
Primer 2SWU07-144_R: GCACTCATAGCATCCATCCC
Product Length165
Publication[view all]
Commentmarker sequence confirmed
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA992928
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A07chromosomeA07:17879740..17879906 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A03chromosomeA03:10152149..10152314 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D03chromosomeD03:43363589..43363754 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018208.1chromosomeCM018208.1:17703743..17703909 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018204.1chromosomeCM018204.1:9623014..9623179 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018217.1chromosomeCM018217.1:43731542..43731707 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_02chromosomeD5_02:37621724..37621889 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_2_4chromosomeKI_2_4:35719103..35719268 -Gossypioides kirkii genome ISU_v3n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:103142284..103142449 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_02chromosomeD10_02:42136730..42136895 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016620.1chromosomeCM016620.1:91986748..91986914 -Gossypium australe (G2) genome CRI_v1.1n/a
CM016615.1chromosomeCM016615.1:99173765..99173930 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr9chromosomeAt_chr9:77842743..77842909 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr3chromosomeDt_chr3:19780865..19781030 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr5chromosomeAt_chr5:7833286..7833451 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A07chromosomeA07:16994932..16995098 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A03chromosomeA03:8730524..8730689 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold172923supercontigscaffold172923:110..275 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D03chromosomeD03:37361998..37362163 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A07chromosomeGhir_A07:18084912..18085078 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A03chromosomeGhir_A03:10544909..10545074 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D03chromosomeGhir_D03:43291124..43291289 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A07chromosomeA07:17326901..17327067 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:10009030..10009195 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D03chromosomeD03:44748711..44748876 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:18111653..18111819 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:10510587..10510752 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D03chromosomeD03:44147011..44147176 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:18086902..18087068 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A03chromosomeA03:9950006..9950171 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D03chromosomeD03:43427215..43427380 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A07chromosomeGbar_A07:17686044..17686210 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A03chromosomeGbar_A03:9471300..9471465 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D03chromosomeGbar_D03:42152552..42152717 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D03chromosomeGbar_D03:42133171..42133336 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A07chromosomeA07:17677339..17677505 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A03chromosomeA03:9664914..9665079 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D03chromosomeD03:44618725..44618890 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017616.1chromosomeCM017616.1:17586099..17586265 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017612.1chromosomeCM017612.1:10107510..10107675 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017625.1chromosomeCM017625.1:43105355..43105520 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017642.1chromosomeCM017642.1:17644660..17644826 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017638.1chromosomeCM017638.1:10490252..10490417 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017651.1chromosomeCM017651.1:47192866..47193031 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017694.1chromosomeCM017694.1:17962395..17962561 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017690.1chromosomeCM017690.1:9920880..9921045 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017703.1chromosomeCM017703.1:44655378..44655543 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A07chromosomeA07:18256727..18256893 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A03chromosomeA03:10635666..10635831 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D03chromosomeD03:45387488..45387653 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:18801289..18801455 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr02chromosomeChr02:9593714..9593879 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:108417046..108417211 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr02chromosomeChr02:39717371..39717536 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_04chromosomeB_04:10456626..10456791 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr03chromosomeChr03:41082663..41082828 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr01chromosomechr01:11746406..11746571 +Gossypium armourianum (D2-1) genome ISU_v1n/a
chr03chromosomechr03:27174123..27174288 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_03chromosomeChr_03:23144713..23144878 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr03chromosomeChr03:43058658..43058823 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr03chromosomeChr03:23569607..23569772 -Gossypium aridum (D4) genome ISU_v1n/a
Chr03chromosomeChr03:20206907..20207072 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr03chromosomeChr03:25307278..25307443 -Gossypium lobatum (D7) genome ISU_v1n/a
E02chromosomeE02:75874580..75874745 -Gossypium stocksii (E1) genome NSF_v1n/a
F07chromosomeF07:16290746..16290912 +Gossypium longicalyx (F1) genome NSF_v1n/a
F02chromosomeF02:67272113..67272278 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr07chromosomeChr07:30971580..30971746 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr02chromosomeChr02:18613546..18613711 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>SWU07-144 ID=SWU07-144; Name=SWU07-144; organism=Gossypium hirsutum; type=genetic_marker; length=165bp
ACGAAACCCTGCCATCCGAAGGTGCCAAAGTGGCTCACTTTTGCTCCATG
TGTGGACCGAAGTTTTGCTCAATGAAGATAACAGAGGATGTTCGAAAGTA
CGCTGAGGAGCATGGNTACGGGAACCCCGAGGAGCTATGCAACATGGGAT
GGATGCTATGAGTGC