SWU07-131, SWU07-131 (genetic_marker) Gossypium herbaceum

Marker Overview
NameSWU07-131
Genbank IDCA994143
TypeSSR
SpeciesGossypium herbaceum
Repeat Motif(GA)3
Primer 1SWU07-131_F: TGAAATTCGATGCTCCAC
Primer 2SWU07-131_R: TGGGAACTACCGAGATGA
Product Length223
Publication[view all]
Commentmarker sequence confirmed
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA994143
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D07chromosomeD07:19807909..19808129 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A07chromosomeA07:25010811..25011033 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018221.1chromosomeCM018221.1:19040571..19040791 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018208.1chromosomeCM018208.1:24819063..24819285 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:18052941..18053161 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_07chromosomeKI_07:26889795..26890015 -Gossypioides kirkii genome ISU_v3n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:24963166..24963388 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_07chromosomeD10_07:35718865..35719082 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016620.1chromosomeCM016620.1:56838042..56838263 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr1chromosomeDt_chr1:29996074..29996296 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr1chromosomeDt_chr1:51801143..51801363 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:18910324..18910544 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A07chromosomeA07:24104787..24105009 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:19503345..19503565 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A07chromosomeGhir_A07:25302707..25302929 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:18726470..18726690 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:24269746..24269968 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:19471264..19471484 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:25363235..25363457 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:19026410..19026630 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A07chromosomeA07:25097935..25098157 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D07chromosomeGbar_D07:19480865..19481085 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A07chromosomeGbar_A07:24847031..24847253 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:19100177..19100397 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A07chromosomeA07:24809907..24810129 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:19444788..19445008 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017616.1chromosomeCM017616.1:24775416..24775638 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:19717531..19717751 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017642.1chromosomeCM017642.1:24954180..24954402 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:19392185..19392405 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017694.1chromosomeCM017694.1:25213313..25213535 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:19685969..19686189 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A07chromosomeA07:25596392..25596614 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:26051687..26051909 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:26562433..26562655 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr07chromosomeChr07:34850269..34850489 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_07chromosomeB_07:25133558..25133779 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr01chromosomeChr01:19161509..19161730 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr01chromosomechr01:16197660..16197877 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_01chromosomeChr_01:14840325..14840542 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:18925291..18925511 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:15131987..15132208 +Gossypium aridum (D4) genome ISU_v1n/a
Chr01chromosomeChr01:12106986..12107207 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr01chromosomeChr01:14659109..14659330 +Gossypium lobatum (D7) genome ISU_v1n/a
E07chromosomeE07:64691689..64691910 -Gossypium stocksii (E1) genome NSF_v1n/a
F07chromosomeF07:22830409..22830631 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr07chromosomeChr07:49344569..49344790 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>SWU07-131 ID=SWU07-131; Name=SWU07-131; organism=Gossypium herbaceum; type=genetic_marker; length=223bp
TGAAATTCGATGCTCCACGATTCCAGCAATAATCTGAAAATTTTAGTATA
TTTTAATTTTATATCAAGCAGATGGTAGGCAAAACTGAAAGTACAAATAT
GCATCAGTTGGAATGAGAGAGGTCATTGTGAATCTAGGTCTAAACCAGGG
GTGCCAAGAGTTGGCCAACAGAAAATGCATCATATTGACCACGTGATTAG
ATAAATCATCTCGGTAGTTCCCA