SWU07-116, SWU07-116 (genetic_marker) Gossypium herbaceum

Marker Overview
NameSWU07-116
Genbank IDCA993989
TypeSSR
SpeciesGossypium herbaceum
Repeat Motif(TA)3,(TAT)3,(GCA)3
Primer 1SWU07-116_F: TTTTCGCCAACCCAACTA
Primer 2SWU07-116_R: ACTATGCTGCTGCCCACA
Product Length152
Publication[view all]
Commentmarker sequence confirmed
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA993989
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D07chromosomeD07:26759802..26759953 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A07chromosomeA07:35905895..35906046 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018221.1chromosomeCM018221.1:25840526..25840677 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018208.1chromosomeCM018208.1:35280940..35281091 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:24238569..24238720 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:35617795..35617946 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_07chromosomeD10_07:28969858..28969993 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016620.1chromosomeCM016620.1:74811514..74811665 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr1chromosomeDt_chr1:58776951..58777102 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr3chromosomeAt_chr3:100249051..100249202 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:25598745..25598896 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A07chromosomeA07:35386039..35386190 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:26235053..26235204 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A07chromosomeGhir_A07:36139590..36139741 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:25589386..25589537 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:35374858..35375009 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:26267422..26267573 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:36514653..36514804 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:25691384..25691535 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A07chromosomeA07:35836968..35837119 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D07chromosomeGbar_D07:26022120..26022271 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A07chromosomeGbar_A07:35339962..35340113 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:26121537..26121688 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A07chromosomeA07:35200631..35200782 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:26260433..26260584 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017616.1chromosomeCM017616.1:35721012..35721163 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:26547596..26547744 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017642.1chromosomeCM017642.1:36067388..36067539 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:26347572..26347723 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017694.1chromosomeCM017694.1:35584737..35584888 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:26543557..26543708 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A07chromosomeA07:36849256..36849407 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:37415398..37415549 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:38188024..38188175 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr07chromosomeChr07:28011745..28011896 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_07chromosomeB_07:35410482..35410633 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr01chromosomeChr01:26218164..26218315 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr01chromosomechr01:22381604..22381739 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_01chromosomeChr_01:20157681..20157816 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:25458665..25458830 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:20730652..20730803 -Gossypium aridum (D4) genome ISU_v1n/a
Chr01chromosomeChr01:16947430..16947581 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr01chromosomeChr01:20439034..20439184 -Gossypium lobatum (D7) genome ISU_v1n/a
E07chromosomeE07:51480866..51481015 +Gossypium stocksii (E1) genome NSF_v1n/a
F07chromosomeF07:32856007..32856157 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr07chromosomeChr07:78706777..78706928 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>SWU07-116 ID=SWU07-116; Name=SWU07-116; organism=Gossypium herbaceum; type=genetic_marker; length=152bp
TTTTCGCCAACCCAACTATATAATAAAAGTAGAAAAGAGTAAGTTGCATA
TAAACTTTATGGAAGTTGGATATTATTATTAATTATGGTTGGGGAAGAAT
AAAACAATGAAAACAAAGGGTGGATATGCATGAGTGTGGGCAGCAGCATA
GT