SWU07-109, SWU07-109 (genetic_marker) Gossypium hirsutum

Marker Overview
NameSWU07-109
Genbank IDCK640502
TypeSSR
SpeciesGossypium hirsutum
Repeat Motif(AT)3,(TA)3,(TA)4
Primer 1SWU07-109_F: TATGAGGGAGCGAAATAAG
Primer 2SWU07-109_R: CTCCTCCGTACAGAAGATG
Product Length174
Publication[view all]
Commentmarker sequence confirmed
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCK640502
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D07chromosomeD07:30307759..30307930 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A07chromosomeA07:43773832..43774005 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018221.1chromosomeCM018221.1:29589577..29589748 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018208.1chromosomeCM018208.1:42123924..42124097 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:27633499..27633670 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_07chromosomeKI_07:21391428..21391602 -Gossypioides kirkii genome ISU_v3n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:44499052..44499225 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_07chromosomeD10_07:25664821..25664994 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016620.1chromosomeCM016620.1:83569229..83569402 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr1chromosomeDt_chr1:79375184..79375355 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr7chromosomeAt_chr7:18650211..18650384 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:29055390..29055561 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A07chromosomeA07:42516921..42517094 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold66576supercontigscaffold66576:144..315 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:29827363..29827534 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A07chromosomeGhir_A07:44209759..44209932 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:29697447..29697618 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:43055589..43055762 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:29884816..29884987 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:44236102..44236275 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:29373391..29373562 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A07chromosomeA07:43220879..43221052 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D07chromosomeGbar_D07:29614229..29614400 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A07chromosomeGbar_A07:42216392..42216565 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:30033405..30033576 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A07chromosomeA07:42261722..42261895 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:29900823..29900994 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017616.1chromosomeCM017616.1:43456393..43456566 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:30209032..30209203 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017642.1chromosomeCM017642.1:43729100..43729273 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:30078779..30078950 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017694.1chromosomeCM017694.1:42728926..42729099 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:30353011..30353182 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A07chromosomeA07:44994606..44994779 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:45173328..45173501 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:46608895..46609068 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr07chromosomeChr07:24553253..24553424 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_07chromosomeB_07:41087226..41087399 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr01chromosomeChr01:29494385..29494556 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr01chromosomechr01:25174578..25174751 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_01chromosomeChr_01:22503948..22504121 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:28935607..28935780 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:23166598..23166771 +Gossypium aridum (D4) genome ISU_v1n/a
Chr01chromosomeChr01:18998176..18998349 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr01chromosomeChr01:22707393..22707566 +Gossypium lobatum (D7) genome ISU_v1n/a
E07chromosomeE07:46880553..46880726 +Gossypium stocksii (E1) genome NSF_v1n/a
F07chromosomeF07:38734016..38734188 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr07chromosomeChr07:90116831..90117004 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>SWU07-109 ID=SWU07-109; Name=SWU07-109; organism=Gossypium hirsutum; type=genetic_marker; length=174bp
TATGAGGGAGCGAAATAAGGACAATTTCTACAAATTTTTGTATACTTGTC
AAAAGGGATTGATCAGAATAATATATAGGGCCGAAAACTCAGGGAATAGA
ATACTACTATATAAAATGGTATATATATTATCTAAAGGAAAATGAGTTTT
GTTTCCATCTTCTGTACGGAGGAG