SWU07-024, SWU07-024 (genetic_marker) Gossypium hirsutum

Marker Overview
NameSWU07-024
Genbank IDCK640593
TypeSSR
SpeciesGossypium hirsutum
Repeat Motif(CT)3
Primer 1SWU07-024_F: AAGACGAACACTGTCCTTA
Primer 2SWU07-024_R: TCAAACTCTACCTTCAAAAC
Product Length101
Publication[view all]
Commentmarker sequence confirmed
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCK640593
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D04chromosomeD04:16158050..16158150 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A05chromosomeA05:79735261..79735361 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018218.1chromosomeCM018218.1:15134464..15134564 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018206.1chromosomeCM018206.1:76043280..76043380 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_04chromosomeD5_04:35993812..35993913 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_06chromosomeKI_06:59152000..59152100 +Gossypioides kirkii genome ISU_v3n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:75722971..75723071 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_04chromosomeD10_04:15055911..15056010 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016617.1chromosomeCM016617.1:29024819..29024920 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr12chromosomeDt_chr12:34643980..34644080 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr9chromosomeAt_chr9:3073899..3073999 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D04chromosomeD04:15227684..15227784 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A05chromosomeA05:72355181..72355281 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:15805317..15805417 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:81950772..81950872 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:15414466..15414566 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:84210508..84210608 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:15750351..15750451 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:82944976..82945076 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:15157951..15158051 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A05chromosomeA05:81938889..81938989 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D04chromosomeGbar_D04:15258205..15258305 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:77027006..77027106 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D04chromosomeD04:15140973..15141073 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:79934172..79934272 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:15308816..15308916 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017614.1chromosomeCM017614.1:79594307..79594407 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:15733074..15733174 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017640.1chromosomeCM017640.1:84005672..84005772 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017704.1chromosomeCM017704.1:15200524..15200624 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017692.1chromosomeCM017692.1:78567599..78567699 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:16201236..16201336 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A05chromosomeA05:84304286..84304386 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:22947362..22947463 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:23368427..23368527 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr04chromosomeChr04:35763837..35763938 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_02chromosomeB_02:64114175..64114275 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr12chromosomeChr12:15407564..15407664 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr12chromosomechr12:13656336..13656436 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr12_5145092chromosomeChr12_5145092:8256..8355 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr12chromosomeChr12:15224470..15224570 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr12chromosomeChr12:12951658..12951758 -Gossypium aridum (D4) genome ISU_v1n/a
Chr12chromosomeChr12:9593526..9593628 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr12chromosomeChr12:11992940..11993040 -Gossypium lobatum (D7) genome ISU_v1n/a
E04chromosomeE04:26076570..26076670 -Gossypium stocksii (E1) genome NSF_v1n/a
F04chromosomeF04:19636928..19637029 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr04chromosomeChr04:50747274..50747372 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>SWU07-024 ID=SWU07-024; Name=SWU07-024; organism=Gossypium hirsutum; type=genetic_marker; length=101bp
AAGACGAACACTGTCCTTAGCGAACTCTCTTAGCGGATCAAAAACTGAGT
CAATTGCGTCCATTTTTAGTTTTTTCTCCTAGTTTTGAAGGTAGAGTTTG
A