SWU07-002, SWU07-002 (genetic_marker) Gossypium barbadense

Marker Overview
NameSWU07-002
Genbank IDCA992656
TypeSSR
SpeciesGossypium barbadense
Repeat Motif(TA)8,(AT)4,(AT)3,(TA)5
Primer 1SWU07-002_F: ACTTTCACCTCCGCATAA
Primer 2SWU07-002_R: TCAACTGTCGGACCATAA
Product Length220
Publication[view all]
Commentmarker sequence confirmed
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA992656
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A07chromosomeA07:91624370..91624587 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018208.1chromosomeCM018208.1:91616248..91616467 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:49238168..49238386 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:95070694..95070915 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Dt_chr1chromosomeDt_chr1:85594366..85594583 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A07chromosomeA07:76099701..76099918 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A07chromosomeGhir_A07:95532115..95532332 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A07chromosomeA07:94488929..94489146 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:94540835..94541052 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:91050830..91051047 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A07chromosomeGbar_A07:90584725..90584944 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A07chromosomeA07:92894208..92894427 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017616.1chromosomeCM017616.1:94593310..94593533 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017642.1chromosomeCM017642.1:97552315..97552530 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017694.1chromosomeCM017694.1:92934151..92934370 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A07chromosomeA07:96704192..96704409 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:98426058..98426279 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:99720050..99720271 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr07chromosomeChr07:2235493..2235711 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_07chromosomeB_07:82459373..82459589 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr01chromosomeChr01:53652834..53653049 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr01chromosomeChr01:40525119..40525345 -Gossypium aridum (D4) genome ISU_v1n/a
Chr01chromosomeChr01:39139853..39140068 -Gossypium lobatum (D7) genome ISU_v1n/a
E07chromosomeE07:3668736..3668969 +Gossypium stocksii (E1) genome NSF_v1n/a
Sequence
>SWU07-002 ID=SWU07-002; Name=SWU07-002; organism=Gossypium barbadense; type=genetic_marker; length=220bp
ACTTTCACCTCCGCATAAAATATCATCTTCTCTAACACAAGCAAGAATCT
GCAACTTTATATATATATATATAATATATATTGGAACCATGACTAATGCT
AGCATATGCTTCTTAAAATTCACTTCTGAGAACACAAACTTCATATATCA
TCTATATATATAAGCCTAAACTACAAATTAACTAAGCAAAATCTGAAGTT
GATTATGGTCCGACAGTTGA