SWU06-102, SWU06-102 (genetic_marker) Gossypium hirsutum

Marker Overview
NameSWU06-102
Genbank IDCA993940
TypeSSR
SpeciesGossypium hirsutum
Repeat Motif(TTC)3
Primer 1SWU06-102_F: CTTTCAGACATGACAGGGATC
Primer 2SWU06-102_R: GGCAGCCATTGATGTTGTA
Product Length252
Publication[view all]
Commentmarker sequence confirmed
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA993940
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:8715702..8715953 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A10chromosomeA10:12384483..12384734 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:8044203..8044454 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018211.1chromosomeCM018211.1:11754945..11755196 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:54371437..54371688 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_10chromosomeKI_10:41515276..41515527 -Gossypioides kirkii genome ISU_v3n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:118666445..118666696 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:56193794..56194045 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016623.1chromosomeCM016623.1:12599534..12599785 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr11chromosomeDt_chr11:2757364..2757615 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr11chromosomeAt_chr11:56061830..56062081 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:7987441..7987692 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A10chromosomeA10:11723836..11724087 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:8365373..8365624 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A10chromosomeGhir_A10:11940416..11940667 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:8348616..8348867 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:11907927..11908178 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:8519974..8520225 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:11567039..11567290 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:8718957..8719208 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A10chromosomeA10:12411776..12412027 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D10chromosomeGbar_D10:7867070..7867321 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A10chromosomeGbar_A10:12051958..12052209 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:8448475..8448726 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A10chromosomeA10:11873876..11874127 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:8254790..8255041 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017619.1chromosomeCM017619.1:11921915..11922166 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:8374092..8374343 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017645.1chromosomeCM017645.1:12387125..12387376 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:8366812..8367063 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017697.1chromosomeCM017697.1:12078611..12078862 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:8636985..8637236 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A10chromosomeA10:12472399..12472650 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:9405744..9405995 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:9807311..9807562 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:7796890..7797141 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:94106212..94106463 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:8550090..8550341 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:7293368..7293619 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:6196458..6196709 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:8157055..8157306 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:6829516..6829767 +Gossypium aridum (D4) genome ISU_v1n/a
Chr11_3356295chromosomeChr11_3356295:3961..4212 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:7055421..7055672 +Gossypium lobatum (D7) genome ISU_v1n/a
E10chromosomeE10:102830159..102830410 -Gossypium stocksii (E1) genome NSF_v1n/a
F10chromosomeF10:8299613..8299864 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr10chromosomeChr10:152573599..152573850 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>SWU06-102 ID=SWU06-102; Name=SWU06-102; organism=Gossypium hirsutum; type=genetic_marker; length=252bp
CTTTCAGACATGACAGGGATCTTAACAGTTGCTCTTTCCATCTCTTTCTC
GAGTTCTTCTTCCCTACGCAATTCTGTGAATTGTGTATCCAAAGACTTGG
CTGCGGATAGCCATGCAAGAACAATCACCAGAAGTATCCCTCCAAGGTAT
GGGGTTGAATTCGCAAGTGATCCAAAGGTCAAGATCATAAACTGTTGAAT
CAAAGCACCCCCTGATTTTCCCAGTGGATTACATACAACATCAATGGCTG
CC