SWU06-082, SWU06-082 (genetic_marker) Gossypium hirsutum

Marker Overview
NameSWU06-082
Genbank IDCA993749
TypeSSR
SpeciesGossypium hirsutum
Repeat Motif(TA)3
Primer 1SWU06-082_F: TCTCCTTGCGATACCCT
Primer 2SWU06-082_R: TTTCCACCACGAACATG
Product Length118
Publication[view all]
Commentmarker sequence confirmed
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA993749
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A11chromosomeA11:47050954..47051071 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018207.1chromosomeCM018207.1:110779886..110780003 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:55481320..55481437 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:127648270..127648387 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_06chromosomeD10_06:5684521..5684766 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016619.1chromosomeCM016619.1:9389499..9389616 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold3210.1supercontigscaffold3210.1:118417..118534 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold1295_A06supercontigscaffold1295_A06:224183..224300 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A06chromosomeGhir_A06:118153308..118153425 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A06chromosomeA06:120889125..120889242 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:120163732..120163849 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:116026506..116026623 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A06chromosomeGbar_A06:109798996..109799113 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A06chromosomeA06:112871944..112872061 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017615.1chromosomeCM017615.1:115763166..115763283 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017641.1chromosomeCM017641.1:121260740..121260857 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017693.1chromosomeCM017693.1:114083923..114084040 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A06chromosomeA06:122324831..122324948 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A06chromosomeA06:122339251..122339367 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:121967192..121967309 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:123635742..123635859 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr06chromosomeChr06:55117290..55117407 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_06chromosomeB_06:6899590..6899836 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr10chromosomeChr10:57352711..57352828 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr10chromosomechr10:44457917..44458161 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_10chromosomeChr_10:39806179..39806424 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:59149129..59149246 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:37629247..37629489 -Gossypium aridum (D4) genome ISU_v1n/a
Chr10chromosomeChr10:32439202..32439447 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr10chromosomeChr10:38516769..38517011 -Gossypium lobatum (D7) genome ISU_v1n/a
E06chromosomeE06:8306983..8307228 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr06chromosomeChr06:9013229..9013472 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>SWU06-082 ID=SWU06-082; Name=SWU06-082; organism=Gossypium hirsutum; type=genetic_marker; length=118bp
TCTCCTTGCGATACCCTGCATGGATGTCTCGTATAAGTTTATCCATAGGC
AACTTGATCATCAATATAAAGATCAGTTCTTTACAAACTCAGTATATAAC
TCATGTTCGTGGTGGAAA