SWU06-043, SWU06-043 (genetic_marker) Gossypium hirsutum

Marker Overview
NameSWU06-043
Genbank IDCA993615
TypeSSR
SpeciesGossypium hirsutum
Repeat Motif(AAG)3
Primer 1SWU06-043_F: TAAGAGGCTAAGGCAGGAA
Primer 2SWU06-043_R: TTTGGGTATTTGCATAGTTGAG
Product Length158
Publication[view all]
Commentmarker sequence confirmed
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA993615
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D06chromosomeD06:6595488..6595646 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A06chromosomeA06:6955558..6955715 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018220.1chromosomeCM018220.1:5857278..5857436 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018207.1chromosomeCM018207.1:7325996..7326153 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:5714459..5714617 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_06chromosomeKI_06:4295565..4295717 +Gossypioides kirkii genome ISU_v3n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:5435712..5435870 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_06chromosomeD10_06:54192933..54193091 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016619.1chromosomeCM016619.1:137596087..137596245 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr10chromosomeDt_chr10:25004243..25004401 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr10chromosomeAt_chr10:66974785..66974942 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:5609094..5609252 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A06chromosomeA06:5898479..5898636 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:6447363..6447521 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A06chromosomeGhir_A06:7339609..7339766 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:6210204..6210362 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:6986192..6986349 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:6431496..6431654 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:7256360..7256517 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:5951642..5951800 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A06chromosomeA06:7190980..7191137 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D06chromosomeGbar_D06:5872738..5872896 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A06chromosomeGbar_A06:7141266..7141423 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:5839817..5839975 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A06chromosomeA06:7169415..7169572 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:6443355..6443513 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017615.1chromosomeCM017615.1:7300048..7300205 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:6032295..6032453 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017641.1chromosomeCM017641.1:7233926..7234083 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:5983848..5984006 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017693.1chromosomeCM017693.1:7414285..7414442 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:6506615..6506773 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A06chromosomeA06:7307392..7307549 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:7289889..7290047 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:7326708..7326866 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr06chromosomeChr06:5600142..5600300 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_06chromosomeB_06:90311926..90312084 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr10chromosomeChr10:6144597..6144755 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr10chromosomechr10:5382115..5382273 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_10chromosomeChr_10:4982835..4982993 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:6302863..6303021 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:4520402..4520560 +Gossypium aridum (D4) genome ISU_v1n/a
Chr10chromosomeChr10:3857966..3858124 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr10chromosomeChr10:4834971..4835129 +Gossypium lobatum (D7) genome ISU_v1n/a
E06chromosomeE06:109451707..109451866 -Gossypium stocksii (E1) genome NSF_v1n/a
F06chromosomeF06:6107430..6107588 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr06chromosomeChr06:192558699..192558857 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>SWU06-043 ID=SWU06-043; Name=SWU06-043; organism=Gossypium hirsutum; type=genetic_marker; length=158bp
TAAGAGGCTAAGGCAGGAAAATTCCACTCTTCTCTAAATCTGTTGATTGG
TTGATTTGATTCTACAAAATTACTGCAGTTGATCACAGAACTATTTATTA
TCAGAAATTTGATCTCAAAGAAGAAGATATTCACCTCTCAACTATGCAAA
TACCCAAA