SWU06-042, SWU06-042 (genetic_marker) Gossypium hirsutum

Marker Overview
NameSWU06-042
Genbank IDCA993615
TypeSSR
SpeciesGossypium hirsutum
Repeat Motif(GCT)3,(CA)3
Primer 1SWU06-042_F: GGGACAAGAGGAGAAGGG
Primer 2SWU06-042_R: CAGAGCAGCCACCAACAA
Product Length213
Publication[view all]
Commentmarker sequence confirmed
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA993615
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D06chromosomeD06:6595941..6596156 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A06chromosomeA06:6956011..6956223 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018220.1chromosomeCM018220.1:5857730..5857945 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018207.1chromosomeCM018207.1:7326449..7326661 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:5714910..5715122 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_06chromosomeKI_06:4296008..4296220 +Gossypioides kirkii genome ISU_v3n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:5436168..5436380 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_06chromosomeD10_06:54192426..54192638 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016619.1chromosomeCM016619.1:137595580..137595792 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr10chromosomeDt_chr10:25004696..25004911 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr10chromosomeAt_chr10:66975238..66975450 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:5609547..5609762 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A06chromosomeA06:5898932..5899144 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:6447816..6448031 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A06chromosomeGhir_A06:7340062..7340274 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:6210657..6210872 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:6986645..6986857 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:6431949..6432164 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:7256813..7257025 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:5952095..5952310 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A06chromosomeA06:7191433..7191645 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D06chromosomeGbar_D06:5873190..5873405 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A06chromosomeGbar_A06:7141719..7141931 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:5840269..5840484 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A06chromosomeA06:7169868..7170080 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017615.1chromosomeCM017615.1:7300501..7300713 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:6032748..6032963 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017641.1chromosomeCM017641.1:7234379..7234591 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:5984300..5984515 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017693.1chromosomeCM017693.1:7414738..7414950 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:6507068..6507283 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A06chromosomeA06:7307845..7308057 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:7290343..7290555 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:7327164..7327376 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr06chromosomeChr06:5600595..5600807 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_06chromosomeB_06:90311418..90311630 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr10chromosomeChr10:6145050..6145262 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_10chromosomeChr_10:4983289..4983501 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:6303316..6303528 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:4520855..4521067 +Gossypium aridum (D4) genome ISU_v1n/a
Chr10chromosomeChr10:3858421..3858633 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr10chromosomeChr10:4835526..4835738 +Gossypium lobatum (D7) genome ISU_v1n/a
E06chromosomeE06:109451180..109451392 -Gossypium stocksii (E1) genome NSF_v1n/a
F06chromosomeF06:6107881..6108093 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr06chromosomeChr06:192558198..192558410 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>SWU06-042 ID=SWU06-042; Name=SWU06-042; organism=Gossypium hirsutum; type=genetic_marker; length=213bp
GGGACAAGAGGAGAAGGGGAGGACGCTTCGGCGAAGAGCTGCTGCTTCCA
ATCCCACATAACCTTTTTGAGGGCTTTGTTAGATTTGGTCAAGGAATCTT
TCTGGGCTTCCAAGGATTCAATAACATTTTGCTGGTTCAGAGATCGAATG
CCTAATACCGCAAATGATGTGACCAAGCACACATCGATCACCACGTTGTT
GGTGGCTGCTCTG