SWU06-040, SWU06-040 (genetic_marker) Gossypium hirsutum

Marker Overview
NameSWU06-040
Genbank IDAI054833
TypeSSR
SpeciesGossypium hirsutum
Repeat Motif(GTG)3,(AAG)3
Primer 1SWU06-040_F: TAGCTTAGTGGTGGTGGC
Primer 2SWU06-040_R: ATGCTGTGATAGCGTGGA
Product Length134
Publication[view all]
Commentmarker sequence confirmed
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAI054833
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D06chromosomeD06:18180222..18180354 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A06chromosomeA06:28269352..28269484 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018220.1chromosomeCM018220.1:16982201..16982333 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018207.1chromosomeCM018207.1:26741019..26741151 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:17054427..17054559 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:28975977..28976109 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_06chromosomeD10_06:44638610..44638742 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016619.1chromosomeCM016619.1:116931651..116931783 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr4chromosomeDt_chr4:30185991..30186123 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr12chromosomeAt_chr12:28811616..28811748 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold4099_D06supercontigscaffold4099_D06:10091..10223 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A06chromosomeA06:26312223..26312355 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:17908183..17908315 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A06chromosomeGhir_A06:28306977..28307109 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:17408626..17408758 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:27444950..27445082 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:17879845..17879977 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:27956335..27956467 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:17404995..17405127 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A06chromosomeA06:27492540..27492672 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D06chromosomeGbar_D06:17142651..17142783 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A06chromosomeGbar_A06:26566486..26566618 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:16881922..16882054 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A06chromosomeA06:26667013..26667145 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:17678155..17678287 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:17332711..17332843 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017641.1chromosomeCM017641.1:28540244..28540376 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:17176190..17176322 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017693.1chromosomeCM017693.1:27210240..27210372 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:18064365..18064497 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A06chromosomeA06:28360018..28360150 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:29110792..29110924 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:30143694..30143826 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr06chromosomeChr06:16863715..16863847 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr10chromosomeChr10:17704459..17704591 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr10chromosomechr10:14649997..14650129 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_10chromosomeChr_10:13816993..13817125 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:18190523..18190655 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:12318586..12318718 -Gossypium aridum (D4) genome ISU_v1n/a
Chr10_3406711chromosomeChr10_3406711:2676..2808 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr10chromosomeChr10:12898155..12898287 -Gossypium lobatum (D7) genome ISU_v1n/a
E06chromosomeE06:88435985..88436117 +Gossypium stocksii (E1) genome NSF_v1n/a
F06chromosomeF06:31865283..31865415 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr06chromosomeChr06:148995393..148995525 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>SWU06-040 ID=SWU06-040; Name=SWU06-040; organism=Gossypium hirsutum; type=genetic_marker; length=134bp
TAGCTTAGTGGTGGTGGCGGCTTTTGCGTTCCCTCTTTTACATTTTCTAC
TTTGTTGAAAACATTTACAATCAGGCGAATGGTTGTGGGCCAAAAGAAGA
AGAGCCATCATCCCAATCCACGCTATCACAGCAT