SWU06-022, SWU06-022 (genetic_marker) Gossypium raimondii

Marker Overview
NameSWU06-022
Genbank IDCA994269
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(AC)3
Primer 1SWU06-022_F: GATTATCGGGCTAGTCGTG
Primer 2SWU06-022_R: GGCTCCCAAATGAGGTTA
Product Length197
Publication[view all]
Commentmarker sequence confirmed
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA994269
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D06chromosomeD06:12208409..12208605 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A06chromosomeA06:16331272..16331468 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018220.1chromosomeCM018220.1:11179012..11179208 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018207.1chromosomeCM018207.1:15577600..15577796 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:11182883..11183079 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_06chromosomeKI_06:6731724..6731920 -Gossypioides kirkii genome ISU_v3n/a
tig00001301_CRI-A2_v1.0.a1chromosometig00001301_CRI-A2_v1.0.a1:33851..34047 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_06chromosomeD10_06:49009331..49009527 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016619.1chromosomeCM016619.1:125436176..125436372 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr10chromosomeDt_chr10:19486383..19486579 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr10chromosomeAt_chr10:74817843..74818039 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:11393153..11393349 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A06chromosomeA06:15166522..15166718 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:11947768..11947964 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A06chromosomeGhir_A06:16606774..16606970 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:11590469..11590665 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:15924263..15924459 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:11932565..11932761 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:16488583..16488779 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:11443318..11443514 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A06chromosomeA06:15906739..15906935 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D06chromosomeGbar_D06:11330829..11331025 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A06chromosomeGbar_A06:15501828..15502024 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:11139022..11139218 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A06chromosomeA06:15551989..15552185 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:11843361..11843557 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017615.1chromosomeCM017615.1:16438228..16438424 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:11533760..11533956 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017641.1chromosomeCM017641.1:15935968..15936164 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:11374786..11374982 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017693.1chromosomeCM017693.1:15896052..15896248 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:12104397..12104593 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A06chromosomeA06:16646927..16647123 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:16245949..16246145 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:17004447..17004643 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr06chromosomeChr06:10969835..10970031 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_06chromosomeB_06:81757362..81757558 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr10chromosomeChr10:11541832..11542028 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr10chromosomechr10:9919281..9919477 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_10chromosomeChr_10:9213993..9214189 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:11805841..11806037 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:8153461..8153657 -Gossypium aridum (D4) genome ISU_v1n/a
Chr10chromosomeChr10:7080525..7080721 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr10chromosomeChr10:8596209..8596405 -Gossypium lobatum (D7) genome ISU_v1n/a
E06chromosomeE06:98606662..98606858 -Gossypium stocksii (E1) genome NSF_v1n/a
F06chromosomeF06:14535079..14535275 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr06chromosomeChr06:174582060..174582256 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>SWU06-022 ID=SWU06-022; Name=SWU06-022; organism=Gossypium raimondii; type=genetic_marker; length=197bp
GATTATCGGGCTAGTCGTGGCTTGGAAGTTAGCAATAGTGATGATTGCAG
TCCAACCTCTCGCAATTATGTGTTTCTACACACGAAAAGTTTTGCTTTCT
AGCATTTCAACTAATTTCGTCAAGGCACAAAATCAAAGTACTCAAATAGC
AGTGGAAGCTGTGTATAATCATAGAATTGTAACCTCATTTGGGAGCC