SWU06-018, SWU06-018 (genetic_marker) Gossypium hirsutum

Marker Overview
NameSWU06-018
Genbank IDCA993620
TypeSSR
SpeciesGossypium hirsutum
Repeat Motif(AT)3
Primer 1SWU06-018_F: AATTTCCCAACTTTCACCT
Primer 2SWU06-018_R: CCTTGTTGCGTGGATTTA
Product Length112
Publication[view all]
Commentmarker sequence confirmed
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA993620
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D06chromosomeD06:9668361..9668472 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018220.1chromosomeCM018220.1:8819304..8819415 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:8890699..8890810 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:9984920..9985070 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_06chromosomeD10_06:51359156..51359300 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr10chromosomeDt_chr10:20201062..20201173 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:8857104..8857215 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:9508685..9508796 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:9210265..9210376 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:9493256..9493367 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:8998818..8998929 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D06chromosomeGbar_D06:8943500..8943611 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:8819131..8819242 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:9454127..9454238 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:9027615..9027726 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017641.1chromosomeCM017641.1:11506593..11506744 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:9013222..9013333 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017693.1chromosomeCM017693.1:11690661..11690811 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:9632127..9632238 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:11773996..11774146 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr06chromosomeChr06:8676426..8676537 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_06chromosomeB_06:86090219..86090359 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr10chromosomeChr10:9266735..9266892 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr10chromosomechr10:7959121..7959263 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_10chromosomeChr_10:7227987..7228210 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:9405274..9405418 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:6516516..6516682 -Gossypium aridum (D4) genome ISU_v1n/a
Chr10chromosomeChr10:5623531..5623688 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr10chromosomeChr10:6952548..6952713 -Gossypium lobatum (D7) genome ISU_v1n/a
Chr06chromosomeChr06:185446814..185446973 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>SWU06-018 ID=SWU06-018; Name=SWU06-018; organism=Gossypium hirsutum; type=genetic_marker; length=112bp
AATTTCCCAACTTTCACCTAGTATTCTCTAAATGAAAAAGAAAAGTTGAT
ATGTCCATGTTCAAAATTCACCTGAGAGTAAAAATATATTATATTAAATC
CACGCAACAAGG