SWU06-016, SWU06-016 (genetic_marker) Gossypium hirsutum

Marker Overview
NameSWU06-016
Genbank IDCA992775
TypeSSR
SpeciesGossypium hirsutum
Repeat Motif(TC)3
Primer 1SWU06-016_F: ATGAAGTGCTGCTGATGCC
Primer 2SWU06-016_R: AATTGTTCGTGCGGAAGG
Product Length238
Publication[view all]
Commentmarker sequence confirmed
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA992775
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D06chromosomeD06:6498103..6498464 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018220.1chromosomeCM018220.1:5774867..5775228 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:5635134..5635495 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_06chromosomeD10_06:54276102..54276478 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016619.1chromosomeCM016619.1:137721631..137722007 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr10chromosomeDt_chr10:24895576..24895937 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:5509562..5509923 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:6344461..6344822 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:6109383..6109744 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:6321046..6321407 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:5841025..5841386 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D06chromosomeGbar_D06:5790334..5790695 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:5757423..5757784 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:6344099..6344460 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:5949601..5949962 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:5883176..5883537 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:6422955..6423316 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:5520903..5521264 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_06chromosomeB_06:90420245..90420621 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr10chromosomeChr10:6082127..6082503 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr10chromosomechr10:5304691..5305066 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_10chromosomeChr_10:4899017..4899393 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr_10chromosomeChr_10:4897950..4898326 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:6209932..6210308 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:4443400..4443776 -Gossypium aridum (D4) genome ISU_v1n/a
Chr10chromosomeChr10:3800142..3800517 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr10chromosomeChr10:4777575..4777951 -Gossypium lobatum (D7) genome ISU_v1n/a
E06chromosomeE06:109766156..109766532 +Gossypium stocksii (E1) genome NSF_v1n/a
F06chromosomeF06:6031461..6031837 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr06chromosomeChr06:192739791..192740167 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x 7235, RIL (2015)AD_ch13_At.13N/A42SWU06-016View
Sequence
>SWU06-016 ID=SWU06-016; Name=SWU06-016; organism=Gossypium hirsutum; type=genetic_marker; length=238bp
ATGAAGTGCTGCTGATGCCATTCATGCTTTTTCCTAGGTTTCTGATTTAT
TCTCTCATTTTTCTTTTCCAACAAATTTGCATCATGATGCAGTATGCTCG
GATTCTGAAAGAATGCGCCTTGCTTCGTTTGCAAGATCCATTAAATGTTT
ATCTTTACAACCAATCTGAAGAAGAGCCTTTTCTAGTTGGAAAAGATATT
CTCTGTTTGGTCCCGAGGGGCCTTCCGCACGAACAATT