SWU01517, SWU01517 (genetic_marker) Gossypium hirsutum

Marker Overview
NameSWU01517
Genbank IDN/A
TypeSSR
SpeciesGossypium barbadense
Repeat Motif(TAAT)3
Primer 1SWU01517_F: GTTTGGTCGAATTGTTGTTG
Primer 2SWU01517_R: AAGGAGAGGATGGTTGTATG
Product Length109
Publication[view all]
Commentmarker sequence confirmed
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D04chromosomeD04:56476278..56476386 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A04chromosomeA04:82560571..82560679 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018218.1chromosomeCM018218.1:54251072..54251180 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018205.1chromosomeCM018205.1:80836775..80836883 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_04chromosomeD5_04:85204..85312 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
tig00015727_CRI-A2_v1.0.a1chromosometig00015727_CRI-A2_v1.0.a1:191833..191941 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
tig00015727_CRI-A2_v1.0.a1chromosometig00015727_CRI-A2_v1.0.a1:173857..173965 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_04chromosomeD10_04:52405075..52405183 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016617.1chromosomeCM016617.1:127927108..127927216 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold1142.1supercontigscaffold1142.1:405214..405322 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr12chromosomeDt_chr12:4243374..4243482 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D04chromosomeD04:51346367..51346475 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A04chromosomeA04:62781388..62781496 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:56303345..56303453 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A04chromosomeGhir_A04:84981116..84981224 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:56824727..56824835 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:56157387..56157495 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:84494017..84494125 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:54214073..54214181 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D04chromosomeGbar_D04:52360350..52360458 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A04chromosomeGbar_A04:81425760..81425868 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D04chromosomeD04:57234388..57234496 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A04chromosomeA04:81835228..81835336 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:54361143..54361251 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017626.1chromosomeCM017626.1:54352985..54353093 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017613.1chromosomeCM017613.1:83305152..83305260 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:57246591..57246699 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017639.1chromosomeCM017639.1:92301408..92301516 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017704.1chromosomeCM017704.1:54378356..54378464 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017691.1chromosomeCM017691.1:81994414..81994522 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:58117944..58118052 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A04chromosomeA04:89042063..89042170 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:109463854..109463962 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:111223319..111223427 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr04chromosomeChr04:111205349..111205457 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr04chromosomeChr04:88078..88186 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_02chromosomeB_02:139727..139835 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr12chromosomeChr12:54185079..54185187 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr12chromosomechr12:29706850..29706958 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_12chromosomeChr_12:23976383..23976491 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr12chromosomeChr12:54113116..54113224 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr12chromosomeChr12:21735830..21735938 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr12chromosomeChr12:27707905..27708013 -Gossypium lobatum (D7) genome ISU_v1n/a
E04chromosomeE04:106277839..106277947 -Gossypium stocksii (E1) genome NSF_v1n/a
F04chromosomeF04:90911292..90911400 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr04chromosomeChr04:177696446..177696552 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>SWU01517 ID=SWU01517; Name=SWU01517; organism=Gossypium barbadense; type=genetic_marker; length=109bp
GTTTGGTCGAATTGTTGTTGTTTTGAAACCATGCTTTTAATTAATCACTT
AATAATTACATTTTAAAGCAAATGTATATCCAATTTACACATACAACCAT
CCTCTCCTT